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While Graph Neural Networks (GNNs) are powerful models for learning representations on graphs, most state-of-the-art models do not have significant accuracy gain beyond two to three layers. Deep GNNs fundamentally need to address: 1).…

Recent works have investigated the role of graph bottlenecks in preventing long-range information propagation in message-passing graph neural networks, causing the so-called `over-squashing' phenomenon. As a remedy, graph rewiring…

机器学习 · 计算机科学 2022-12-14 Domenico Tortorella , Alessio Micheli

As a randomized learner model, SCNs are remarkable that the random weights and biases are assigned employing a supervisory mechanism to ensure universal approximation and fast learning. However, the randomness makes SCNs more likely to…

机器学习 · 计算机科学 2022-05-27 Wei Dai , Chuanfeng Ning , Shiyu Pei , Song Zhu , Xuesong Wang

Geometric graph neural networks (GNNs) have emerged as powerful tools for modeling molecular geometry. However, they encounter limitations in effectively capturing long-range interactions in large molecular systems. To address this…

机器学习 · 计算机科学 2024-09-27 Yusong Wang , Chaoran Cheng , Shaoning Li , Yuxuan Ren , Bin Shao , Ge Liu , Pheng-Ann Heng , Nanning Zheng

Graph neural networks (GNNs) have exhibited state-of-the-art performance across wide-range of domains such as recommender systems, material design, and drug repurposing. Yet message-passing GNNs suffer from over-squashing -- exponential…

机器学习 · 计算机科学 2025-08-14 Danial Saber , Amirali Salehi-Abari

Most state-of-the-art Graph Neural Networks (GNNs) can be defined as a form of graph convolution which can be realized by message passing between direct neighbors or beyond. To scale such GNNs to large graphs, various neighbor-, layer-, or…

机器学习 · 计算机科学 2021-10-28 Mucong Ding , Kezhi Kong , Jingling Li , Chen Zhu , John P Dickerson , Furong Huang , Tom Goldstein

Message Passing Neural Networks (MPNNs) are a class of Graph Neural Networks (GNNs) that propagate information across the graph via local neighborhoods. The scheme gives rise to two key challenges: over-smoothing and over-squashing. While…

机器学习 · 计算机科学 2025-05-30 Jasraj Singh , Keyue Jiang , Brooks Paige , Laura Toni

Message passing is the dominant paradigm in Graph Neural Networks (GNNs). The efficiency of message passing, however, can be limited by the topology of the graph. This happens when information is lost during propagation due to being…

机器学习 · 计算机科学 2024-11-05 Floriano Tori , Vincent Holst , Vincent Ginis

Graph Neural Networks (GNNs) perform computations on graphs by routing the signal between graph regions using a graph shift operator or a message passing scheme. Often, the propagation of the signal leads to a loss of information, where the…

机器学习 · 计算机科学 2026-05-14 Eden Nagar , Ya-Wei Eileen Lin , Ron Levie

Graph Neural Networks (GNNs) struggle to balance heterophily and homophily in representation learning, a challenge further amplified in self-supervised settings. We propose H$^3$GNNs, an end-to-end self-supervised learning framework that…

机器学习 · 计算机科学 2025-04-17 Rui Xue , Tianfu Wu

Most graph neural networks (GNNs) are prone to the phenomenon of over-squashing in which node features become insensitive to information from distant nodes in the graph. Recent works have shown that the topology of the graph has the…

机器学习 · 计算机科学 2023-11-30 Julia Balla

Graph Neural Networks (GNNs) are the subject of intense focus by the machine learning community for problems involving relational reasoning. GNNs can be broadly divided into spatial and spectral approaches. Spatial approaches use a form of…

机器学习 · 统计学 2021-01-05 Kimberly Stachenfeld , Jonathan Godwin , Peter Battaglia

Graph Neural Networks learn on graph-structured data by iteratively aggregating local neighborhood information. While this local message passing paradigm imparts a powerful inductive bias and exploits graph sparsity, it also yields three…

机器学习 · 计算机科学 2025-11-07 Ryien Hosseini , Filippo Simini , Venkatram Vishwanath , Rebecca Willett , Henry Hoffmann

Graph neural networks (GNNs) have received tremendous attention due to their superiority in learning node representations. These models rely on message passing and feature transformation functions to encode the structural and feature…

机器学习 · 计算机科学 2021-12-02 Kai Guo , Kaixiong Zhou , Xia Hu , Yu Li , Yi Chang , Xin Wang

Graph neural networks (GNNs) are a powerful solution for various structure learning applications due to their strong representation capabilities for graph data. However, traditional GNNs, relying on message-passing mechanisms that gather…

机器学习 · 计算机科学 2024-03-19 Wei Duan , Jie Lu , Yu Guang Wang , Junyu Xuan

Long-range interactions are essential for the correct description of complex systems in many scientific fields. The price to pay for including them in the calculations, however, is a dramatic increase in the overall computational costs.…

In recent years, Graph Neural Networks (GNNs) have been popular in the graph classification task. Currently, shallow GNNs are more common due to the well-known over-smoothing problem facing deeper GNNs. However, they are sub-optimal without…

机器学习 · 计算机科学 2023-02-20 Lanning Wei , Zhiqiang He , Huan Zhao , Quanming Yao

Graph neural networks (GNNs) are emerging machine learning models on graphs. Permutation-equivariance and proximity-awareness are two important properties highly desirable for GNNs. Both properties are needed to tackle some challenging…

机器学习 · 计算机科学 2022-02-23 Ziwei Zhang , Chenhao Niu , Peng Cui , Jian Pei , Bo Zhang , Wenwu Zhu

While Graph Neural Networks (GNNs) have been successfully leveraged for learning on graph-structured data across domains, several potential pitfalls have been described recently. Those include the inability to accurately leverage…

机器学习 · 计算机科学 2024-03-21 Lukas Fesser , Melanie Weber

Message Passing Neural Networks (MPNNs) are a common type of Graph Neural Network (GNN), in which each node's representation is computed recursively by aggregating representations (messages) from its immediate neighbors akin to a…

机器学习 · 计算机科学 2022-04-22 Lingxiao Zhao , Wei Jin , Leman Akoglu , Neil Shah