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Task functional magnetic resonance imaging (fMRI) is a type of neuroimaging data used to identify areas of the brain that activate during specific tasks or stimuli. These data are conventionally modeled using a massive univariate approach…

统计方法学 · 统计学 2022-11-04 Daniel A. Spencer , David Bolin , Amanda F. Mejia

Segmentation of Multiple Sclerosis (MS) lesions in longitudinal brain MR scans is performed for monitoring the progression of MS lesions. We hypothesize that the spatio-temporal cues in longitudinal data can aid the segmentation algorithm.…

图像与视频处理 · 电气工程与系统科学 2020-09-29 Stefan Denner , Ashkan Khakzar , Moiz Sajid , Mahdi Saleh , Ziga Spiclin , Seong Tae Kim , Nassir Navab

Brain decoding, aiming to identify the brain states using neural activity, is important for cognitive neuroscience and neural engineering. However, existing machine learning methods for fMRI-based brain decoding either suffer from low…

神经元与认知 · 定量生物学 2022-10-13 Ziyuan Ye , Youzhi Qu , Zhichao Liang , Mo Wang , Quanying Liu

In neuroscience, understanding inter-individual differences has recently emerged as a major challenge, for which functional magnetic resonance imaging (fMRI) has proven invaluable. For this, neuroscientists rely on basic methods such as…

计算机视觉与模式识别 · 计算机科学 2020-04-07 Akrem Sellami , François-Xavier Dupé , Bastien Cagna , Hachem Kadri , Stéphane Ayache , Thierry Artières , Sylvain Takerkart

Neuroscientists have recently turned to intracranial brain recording methods, like electrocorticography (ECoG), for human experiments because of the fine spatial and temporal resolution that they afford. Models trained on this data,…

计算与语言 · 计算机科学 2026-05-20 Aditya R. Vaidya , Richard J. Antonello , Alexander G. Huth

The goal of this study is to investigate whether latent space representations of visual stimuli and fMRI data share common information. Decoding and reconstructing stimuli from fMRI data remains a challenge in AI and neuroscience, with…

神经元与认知 · 定量生物学 2025-03-28 Cesare Maria Dalbagno , Manuel de Castro Ribeiro Jardim , Mihnea Angheluţă

Human language processing relies on the brain's capacity for predictive inference. We present a machine learning framework for decoding neural (EEG) responses to dynamic visual language stimuli in Deaf signers. Using coherence between…

神经元与认知 · 定量生物学 2025-12-25 Sean C. Borneman , Julia Krebs , Ronnie B. Wilbur , Evie A. Malaia

In this work we introduce a self-supervised pretraining framework for transformers on functional Magnetic Resonance Imaging (fMRI) data. First, we pretrain our architecture on two self-supervised tasks simultaneously to teach the model a…

机器学习 · 计算机科学 2023-05-17 Sean Paulsen , Michael Casey

Neural encoding and decoding, which aim to characterize the relationship between stimuli and brain activities, have emerged as an important area in cognitive neuroscience. Traditional encoding models, which focus on feature extraction and…

神经元与认知 · 定量生物学 2019-08-26 Hao Wu , Ziyu Zhu , Jiayi Wang , Nanning Zheng , Badong Chen

Accurate fMRI analysis requires sensitivity to temporal structure across multiple scales, as BOLD signals encode cognitive processes that emerge from fast transient dynamics to slower, large-scale fluctuations. Existing deep learning (DL)…

信号处理 · 电气工程与系统科学 2026-01-06 Furkan Genç , Boran İsmet Macun , Sait Sarper Özaslan , Emine U. Saritas , Tolga Çukur

Finding an appropriate representation of dynamic activities in the brain is crucial for many downstream applications. Due to its highly dynamic nature, temporally averaged fMRI (functional magnetic resonance imaging) can only provide a…

机器学习 · 计算机科学 2022-08-18 Sikun Lin , Shuyun Tang , Scott Grafton , Ambuj Singh

Functional connectivity (FC) derived from resting-state fMRI plays a critical role in personalized predictions such as age and cognitive performance. However, applying foundation models(FM) to fMRI data remains challenging due to its high…

神经元与认知 · 定量生物学 2025-08-26 Yanwen Wang , Xinglin Zhao , Yijin Song , Xiaobo Liu , Yanrong Hao , Rui Cao , Xin Wen

Cross-subject electroencephalography (EEG) decoding remains a fundamental challenge in brain-computer interface (BCI) research due to substantial inter-subject variability and the scarcity of subject-invariant representations. This paper…

机器学习 · 计算机科学 2025-08-18 Changhong Jing , Yan Liu , Shuqiang Wang , Bruce X. B. Yu , Gong Chen , Zhejing Hu , Zhi Zhang , Yanyan Shen

Decoding visual-semantic information from brain signals, such as functional MRI (fMRI), across different subjects poses significant challenges, including low signal-to-noise ratio, limited data availability, and cross-subject variability.…

计算机视觉与模式识别 · 计算机科学 2024-09-27 Ruizhe Zheng , Lichao Sun

This thesis delves into the world of non-invasive electrophysiological brain signals like electroencephalography (EEG) and magnetoencephalography (MEG), focusing on modelling and decoding such data. The research aims to investigate what…

信号处理 · 电气工程与系统科学 2025-10-30 Richard Csaky

Recent achievements in implantable brain-computer interfaces (iBCIs) have demonstrated the potential to decode cognitive and motor behaviors with intracranial brain recordings; however, individual physiological and electrode implantation…

神经元与认知 · 定量生物学 2025-06-17 Di Wu , Linghao Bu , Yifei Jia , Lu Cao , Siyuan Li , Siyu Chen , Yueqian Zhou , Sheng Fan , Wenjie Ren , Dengchang Wu , Kang Wang , Yue Zhang , Yuehui Ma , Jie Yang , Mohamad Sawan

Decoding sensory experiences from neural activity to reconstruct human-perceived visual stimuli and semantic content remains a challenge in neuroscience and artificial intelligence. Despite notable progress in current brain decoding models,…

神经元与认知 · 定量生物学 2025-10-13 Feihan Feng , Jingxin Nie

Encoding models provide a powerful framework for linking continuous stimulus features to neural activity; however, traditional voxelwise approaches are limited by measurement noise, inter-subject variability, and redundancy arising from…

计算与语言 · 计算机科学 2026-04-29 Kamya Hari , Taha Binhuraib , Jin Li , Cory Shain , Anna A. Ivanova

Decoding non-invasive brain recordings is pivotal for advancing our understanding of human cognition but faces challenges due to individual differences and complex neural signal representations. Traditional methods often require customized…

神经与进化计算 · 计算机科学 2024-10-15 Guobin Shen , Dongcheng Zhao , Xiang He , Linghao Feng , Yiting Dong , Jihang Wang , Qian Zhang , Yi Zeng

Encoding and decoding models are widely used in systems, cognitive, and computational neuroscience to make sense of brain-activity data. However, the interpretation of their results requires care. Decoding models can help reveal whether…

神经元与认知 · 定量生物学 2019-04-29 Nikolaus Kriegeskorte , Pamela K. Douglas