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In this study, we present a novel approach along with the needed computational strategies for efficient and scalable feature engineering of the crystal structure in compounds of different chemical compositions. This approach utilizes a…

材料科学 · 物理学 2021-05-25 Prathik R. Kaundinya , Kamal Choudhary , Surya R. Kalidindi

Molecular docking is critical to structure-based virtual screening, yet the throughput of such workflows is limited by the expensive optimization of scoring functions involved in most docking algorithms. We explore how machine learning can…

生物大分子 · 定量生物学 2024-09-04 Bowen Jing , Tommi Jaakkola , Bonnie Berger

The geometric design of structures with optimized physical and chemical properties is one of the core topics in materials science. However, designing new functional materials is challenging due to the vast number of existing and the…

光学 · 物理学 2025-07-17 Congcong Cui , Guangfeng Wei , Matthias Saba , Yuanyuan Cao , Lu Han

Spatial classification with limited feature observations has been a challenging problem in machine learning. The problem exists in applications where only a subset of sensors are deployed at certain spots or partial responses are collected…

机器学习 · 计算机科学 2020-09-03 Arpan Man Sainju , Wenchong He , Zhe Jiang , Da Yan , Haiquan Chen

Machine learning methods have shown promise in predicting molecular properties, and given sufficient training data machine learning approaches can enable rapid high-throughput virtual screening of large libraries of compounds. Graph-based…

Spatial transcriptomics has revolutionized tissue analysis by simultaneously mapping gene expression, spatial topography, and histological context across consecutive tissue sections, enabling systematic investigation of spatial…

应用统计 · 统计学 2025-10-24 Meng Zhou , Shuangge Ma , Mengyun Wu

The location, timing, and abundance of gene expression (both mRNA and proteins) within a tissue define the molecular mechanisms of cell functions. Recent technology breakthroughs in spatial molecular profiling, including imaging-based…

应用统计 · 统计学 2020-12-10 Qiwei Li , Minzhe Zhang , Yang Xie , Guanghua Xiao

Incorporating known symmetries in data into machine learning models has consistently improved predictive accuracy, robustness, and generalization. However, achieving exact invariance to specific symmetries typically requires designing…

机器学习 · 计算机科学 2026-03-03 Cindy Y. Zhang , Elif Ertekin , Peter Orbanz , Ryan P. Adams

High-throughput approximations of quantum mechanics calculations and combinatorial experiments have been traditionally used to reduce the search space of possible molecules, drugs and materials. However, the interplay of structural and…

量子物理 · 物理学 2019-10-29 Alain Tchagang , Julio Valdés

Recent advances in materials discovery have been driven by structure-based models, particularly those using crystal graphs. While effective for computational datasets, these models are impractical for real-world applications where atomic…

机器学习 · 计算机科学 2025-07-03 Jithendaraa Subramanian , Linda Hung , Daniel Schweigert , Santosh Suram , Weike Ye

Machine learning has the potential to accelerate materials discovery by accurately predicting materials properties at a low computational cost. However, the model inputs remain a key stumbling block. Current methods typically use…

计算物理 · 物理学 2021-01-07 Rhys E. A. Goodall , Alpha A. Lee

The capabilities of additive manufacturing have facilitated the design and production of mechanical metamaterials with diverse unit cell geometries. Establishing linkages between the vast design space of unit cells and their effective…

计算工程、金融与科学 · 计算机科学 2025-05-05 Hooman Danesh , Maruthi Annamaraju , Tim Brepols , Stefanie Reese , Surya R. Kalidindi

Machine learning over-fitting caused by data scarcity greatly limits the application of machine learning for molecules. Due to manufacturing processes difference, big data is not always rendered available through computational chemistry…

机器学习 · 计算机科学 2020-11-20 Ziyang Zhang , Yingtao Luo

We present a complete set of chemo-structural descriptors to significantly extend the applicability of machine-learning (ML) in material screening and mapping energy landscape for multicomponent systems. These new descriptors allow…

材料科学 · 物理学 2018-08-08 Kamal Choudhary , Brian DeCost , Francesca Tavazza

Spatial documentation is exponentially increasing given the availability of Big IoT Data, enabled by the devices miniaturization and data storage capacity. Bayesian spatial statistics is a useful statistical tool to determine the dependence…

统计方法学 · 统计学 2020-10-01 Francisco Louzada , Diego C. Nascimento , Osafu Augustine Egbon

The use of covariance kernels is ubiquitous in the field of spatial statistics. Kernels allow data to be mapped into high-dimensional feature spaces and can thus extend simple linear additive methods to nonlinear methods with higher order…

机器学习 · 统计学 2017-11-16 Jean-Francois Ton , Seth Flaxman , Dino Sejdinovic , Samir Bhatt

Machine learning methods such as convolutional neural networks (CNNs) are becoming an integral part of scientific research in many disciplines, spatial vector data often fail to be analyzed using these powerful learning methods because of…

机器学习 · 统计学 2018-09-24 Xiongfeng Yan , Tinghua Ai

Eficient, physically-inspired descriptors of the structure and composition of molecules and materials play a key role in the application of machine-learning techniques to atomistic simulations. The proliferation of approaches, as well as…

计算物理 · 物理学 2020-12-11 Alexander Goscinski , Guillaume Fraux , Giulio Imbalzano , Michele Ceriotti

Merging the two cultures of deep and statistical learning provides insights into structured high-dimensional data. Traditional statistical modeling is still a dominant strategy for structured tabular data. Deep learning can be viewed…

统计方法学 · 统计学 2021-10-25 Anindya Bhadra , Jyotishka Datta , Nick Polson , Vadim Sokolov , Jianeng Xu

Statistical learning in high-dimensional spaces is challenging without a strong underlying data structure. Recent advances with foundational models suggest that text and image data contain such hidden structures, which help mitigate the…

机器学习 · 统计学 2025-02-04 Charles Arnal , Clement Berenfeld , Simon Rosenberg , Vivien Cabannes
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