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Self-supervised learning has recently gained growing interest in molecular modeling for scientific tasks such as AI-assisted drug discovery. Current studies consider leveraging both 2D and 3D molecular structures for representation…

机器学习 · 计算机科学 2023-10-10 Qiying Yu , Yudi Zhang , Yuyan Ni , Shikun Feng , Yanyan Lan , Hao Zhou , Jingjing Liu

Molecule and text representation learning has gained increasing interest due to its potential for enhancing the understanding of chemical information. However, existing models often struggle to capture subtle differences between molecules…

机器学习 · 计算机科学 2025-10-31 Hyuntae Park , Yeachan Kim , SangKeun Lee

Modern deep learning models have demonstrated outstanding performance on discovering the underlying mechanisms when both visual appearance and intrinsic relations (e.g., causal structure) data are sufficient, such as Disentangled…

计算机视觉与模式识别 · 计算机科学 2024-09-02 Hanchen Xie , Jiageng Zhu , Mahyar Khayatkhoei , Jiazhi Li , Wael AbdAlmageed

Machine learning (ML) of quantum mechanical properties shows promise for accelerating chemical discovery. For transition metal chemistry where accurate calculations are computationally costly and available training data sets are small, the…

材料科学 · 物理学 2017-11-07 Jon Paul Janet , Heather J. Kulik

Self-supervised representation learning (SSL) on biomedical networks provides new opportunities for drug discovery. However, how to effectively combine multiple SSL models is still challenging and has been rarely explored. Therefore, we…

机器学习 · 计算机科学 2022-12-20 Xiaoqi Wang , Yingjie Cheng , Yaning Yang , Yue Yu , Fei Li , Shaoliang Peng

Predicted inter-chain residue-residue contacts can be used to build the quaternary structure of protein complexes from scratch. However, only a small number of methods have been developed to reconstruct protein quaternary structures using…

机器学习 · 计算机科学 2022-05-30 Elham Soltanikazemi , Raj S. Roy , Farhan Quadir , Nabin Giri , Alex Morehead , Jianlin Cheng

Masked image modelling (e.g., Masked AutoEncoder) and contrastive learning (e.g., Momentum Contrast) have shown impressive performance on unsupervised visual representation learning. This work presents Masked Contrastive Representation…

计算机视觉与模式识别 · 计算机科学 2022-11-14 Yuchong Yao , Nandakishor Desai , Marimuthu Palaniswami

Relational Deep Learning (RDL) is an emerging paradigm that leverages Graph Neural Network principles to learn directly from relational databases by representing them as heterogeneous graphs. However, existing RDL models typically rely on…

机器学习 · 计算机科学 2025-07-01 Jakub Peleška , Gustav Šír

The accuracy of deep learning (e.g., convolutional neural networks) for an image classification task critically relies on the amount of labeled training data. Aiming to solve an image classification task on a new domain that lacks labeled…

计算机视觉与模式识别 · 计算机科学 2019-01-01 Xianghong Fang , Haoli Bai , Ziyi Guo , Bin Shen , Steven Hoi , Zenglin Xu

This paper focuses on molecular communication (MC) systems using two types of signaling molecules which may participate in a reversible bimolecular reaction in the channel. The motivation for studying these MC systems is that they can…

信息论 · 计算机科学 2019-07-25 Vahid Jamali , Nariman Farsad , Robert Schober , Andrea Goldsmith

We propose Domain-Conditioned Meta-Contrastive Learning, a framework for improving the cross-domain generalization of vision-language models. While contrastive models such as CLIP achieve strong performance through large-scale training,…

最优化与控制 · 数学 2026-03-31 Merham Fouladvand , Peuroly Batra

Communication is an effective mechanism for coordinating the behaviors of multiple agents, broadening their views of the environment, and to support their collaborations. In the field of multi-agent deep reinforcement learning (MADRL),…

多智能体系统 · 计算机科学 2024-10-21 Changxi Zhu , Mehdi Dastani , Shihan Wang

Molecule representation learning is crucial for understanding and predicting molecular properties. However, conventional atom-centric models, which treat chemical bonds merely as pairwise interactions, often overlook complex bond-level…

机器学习 · 计算机科学 2026-03-03 Yunqing Liu , Yi Zhou , Wenqi Fan

Deep learning models for dermatological image analysis remain sensitive to acquisition variability and domain-specific visual characteristics, leading to performance degradation when deployed in clinical settings. We investigate how visual…

计算机视觉与模式识别 · 计算机科学 2026-02-24 Rodrigo Mota , Kelvin Cunha , Emanoel dos Santos , Fábio Papais , Francisco Filho , Thales Bezerra , Erico Medeiros , Paulo Borba , Tsang Ing Ren

Recent disentangled representation learning (DRL) methods heavily rely on factor specific strategies-either learning objectives for attributes or model architectures for objects-to embed inductive biases. Such divergent approaches result in…

机器学习 · 计算机科学 2025-11-12 Whie Jung , Dong Hoon Lee , Seunghoon Hong

Accurate yet transferable machine-learning interatomic potentials (MLIPs) are essential for accelerating materials and chemical discovery. However, most universal MLIPs overfit to narrow datasets or computational protocols, limiting their…

The success of deep reinforcement learning (DRL) relies on the availability and quality of training data, often requiring extensive interactions with specific environments. In many real-world scenarios, where data collection is costly and…

机器学习 · 计算机科学 2025-04-15 Amir Abolfazli , Zekun Song , Avishek Anand , Wolfgang Nejdl

Recent years have seen a rapid growth of utilizing graph neural networks (GNNs) in the biomedical domain for tackling drug-related problems. However, like any other deep architectures, GNNs are data hungry. While requiring labels in real…

生物物理 · 物理学 2022-05-03 Mengying Sun , Jing Xing , Huijun Wang , Bin Chen , Jiayu Zhou

Adversarial training is a useful approach to promote the learning of transferable representations across the source and target domains, which has been widely applied for domain adaptation (DA) tasks based on deep neural networks. Until very…

机器学习 · 计算机科学 2020-03-31 Zeya Wang , Baoyu Jing , Yang Ni , Nanqing Dong , Pengtao Xie , Eric P. Xing

Self-supervised learning (SSL) is a method that learns the data representation by utilizing supervision inherent in the data. This learning method is in the spotlight in the drug field, lacking annotated data due to time-consuming and…

生物大分子 · 定量生物学 2022-08-19 Kisung Moon , Sunyoung Kwon