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Seed science is essential for modern agriculture, directly influencing crop yields and global food security. However, challenges such as interdisciplinary complexity and high costs with limited returns hinder progress, leading to a shortage…

计算与语言 · 计算机科学 2025-05-20 Jie Ying , Zihong Chen , Zhefan Wang , Wanli Jiang , Chenyang Wang , Zhonghang Yuan , Haoyang Su , Huanjun Kong , Fan Yang , Nanqing Dong

To improve crop genetics, high-throughput, effective and comprehensive phenotyping is a critical prerequisite. While such tasks were traditionally performed manually, recent advances in multimodal foundation models, especially in…

计算机视觉与模式识别 · 计算机科学 2026-04-14 Yu Wu , Guangzeng Han , Ibra Niang Niang , Francia Ravelombola , Maiara Oliveira , Jason Davis , Dong Chen , Feng Lin , Xiaolei Huang

Precise automated understanding of agricultural tasks such as disease identification is essential for sustainable crop production. Recent advances in vision-language models (VLMs) are expected to further expand the range of agricultural…

计算机视觉与模式识别 · 计算机科学 2025-07-29 Risa Shinoda , Nakamasa Inoue , Hirokatsu Kataoka , Masaki Onishi , Yoshitaka Ushiku

This study investigates the current landscape and future directions of protein foundation model research. While recent advancements have transformed protein science and engineering, the field lacks a comprehensive benchmark for fair…

生物大分子 · 定量生物学 2025-06-19 Zhangyang Gao , Hao Wang , Cheng Tan , Chenrui Xu , Mengdi Liu , Bozhen Hu , Linlin Chao , Xiaoming Zhang , Stan Z. Li

We study the task of automatically finding evidence relevant to hypotheses in biomedical papers. Finding relevant evidence is an important step when researchers investigate scientific hypotheses. We introduce EvidenceBench to measure models…

Multimodal retrieval is becoming a crucial component of modern AI applications, yet its evaluation lags behind the demands of more realistic and challenging scenarios. Existing benchmarks primarily probe surface-level semantic…

Benchmarks are the de facto standard for tracking progress in large language models (LLMs), yet static test sets can rapidly saturate, become vulnerable to contamination, and are costly to refresh. Scalable evaluation of open-ended items…

计算与语言 · 计算机科学 2026-03-24 Yandan Zheng , Haoran Luo , Zhenghong Lin , Wenjin Liu , Luu Anh Tuan

Foundation models and vision-language pre-training have significantly advanced Vision-Language Models (VLMs), enabling multimodal processing of visual and linguistic data. However, their application in domain-specific agricultural tasks,…

计算机视觉与模式识别 · 计算机科学 2026-02-23 Khang Nguyen Quoc , Phuong D. Dao , Luyl-Da Quach

Variant and gene interpretation are fundamental to personalized medicine and translational biomedicine. However, traditional approaches are manual and labor-intensive. Generative language models (LMs) can facilitate this process,…

人工智能 · 计算机科学 2025-10-15 Owen Queen , Harrison G. Zhang , James Zou

The application of deep learning methods, particularly foundation models, in biological research has surged in recent years. These models can be text-based or trained on underlying biological data, especially omics data of various types.…

人工智能 · 计算机科学 2024-12-06 Yoav Kan-Tor , Michael Morris Danziger , Eden Zohar , Matan Ninio , Yishai Shimoni

In contrast to their remarkable performance on general knowledge QA, the true abilities of Large Language Models (LLMs) in tasks demanding deep, specialized reasoning, such as in protein biology, have yet to be thoroughly investigated.…

定量方法 · 定量生物学 2025-12-30 Dingyi Rong , Zijian Chen , Qi Jia , Kaiwei Zhang , Haotian Lu , Guangtao Zhai , Ning Liu

Planning is a fundamental capability for large language models (LLMs) because such complex tasks require models to coordinate goals, constraints, resources, and long-term consequences into executable and verifiable solutions. Existing…

人工智能 · 计算机科学 2026-05-21 Ziliang Zhao , Zenan Xu , Shuting Wang , Hongjin Qian , Yan Lei , Minda Hu , Zhao Wang , Shihan Dou , Zhicheng Dou , Pluto Zhou

Visual markups such as highlights, underlines, and bold text are common in table-centric documents. Although multimodal large language models (MLLMs) have made substantial progress in document understanding, their ability to treat such cues…

计算机视觉与模式识别 · 计算机科学 2026-03-31 Lexin Wang , Shenghua Liu , Yiwei Wang , Yujun Cai , Yuyao Ge , Jiayu Yao , Jiafeng Guo , Xueqi Cheng

Models like OpenAI-o3 pioneer visual grounded reasoning by dynamically referencing visual regions, just like human "thinking with images". However, no benchmark exists to evaluate these capabilities holistically. To bridge this gap, we…

计算机视觉与模式识别 · 计算机科学 2026-03-06 Haochen Wang , Xiangtai Li , Zilong Huang , Anran Wang , Jiacong Wang , Tao Zhang , Jiani Zheng , Sule Bai , Zijian Kang , Jiashi Feng , Zhuochen Wang , Zhaoxiang Zhang

Mathematical reasoning is a hallmark of human intelligence, and whether large language models (LLMs) can meaningfully perform it remains a central question in artificial intelligence and cognitive science. As LLMs are increasingly…

计算与语言 · 计算机科学 2026-04-03 Linyang He , Qiyao Yu , Hanze Dong , Baohao Liao , Xinxing Xu , Micah Goldblum , Jiang Bian , Nima Mesgarani

Accurate and interpretable plant disease diagnosis remains a major challenge for vision-language models (VLMs) in real-world agriculture. We introduce AgriChain, a dataset of approximately 11,000 expert-curated leaf images spanning diverse…

计算机视觉与模式识别 · 计算机科学 2026-04-10 Hazza Mahmood , Yongqiang Yu , Rao Anwer

Visual grounding, the task of localizing objects described by natural-language expressions, is a foundational capability for agricultural AI systems, enabling applications such as selective weeding, disease monitoring, and targeted…

计算机视觉与模式识别 · 计算机科学 2026-05-22 Haocheng Li , Juepeng Zheng , Zenghao Yang , Kaiqi Du , Guilong Xiao , Gengmeng Pu , Haohuan Fu , Jianxi Huang

Large language models (LLMs) are increasingly being used for complex research tasks such as literature review, idea generation, and scientific paper analysis, yet their ability to truly understand and process the intricate relationships…

计算与语言 · 计算机科学 2025-06-11 Shashidhar Reddy Javaji , Yupeng Cao , Haohang Li , Yangyang Yu , Nikhil Muralidhar , Zining Zhu

Prior benchmarks for evaluating the domain-specific knowledge of large language models (LLMs) lack the scalability to handle complex academic tasks. To address this, we introduce \texttt{ScholarBench}, a benchmark centered on deep expert…

计算与语言 · 计算机科学 2025-10-17 Dongwon Noh , Donghyeok Koh , Junghun Yuk , Gyuwan Kim , Jaeyong Lee , Kyungtae Lim , Cheoneum Park

Large Language Models (LLMs) have demonstrated remarkable abilities in scientific reasoning, yet their reasoning capabilities in materials science remain underexplored. To fill this gap, we introduce MatSciBench, a comprehensive…

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