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The processing of entities in natural language is essential to many medical NLP systems. Unfortunately, existing datasets vastly under-represent the entities required to model public health relevant texts such as health advice often found…

计算与语言 · 计算机科学 2022-10-10 Joseph Gatto , Parker Seegmiller , Garrett Johnston , Sarah M. Preum

Background: Natural Language Processing (NLP) is widely used to extract clinical insights from Electronic Health Records (EHRs). However, the lack of annotated data, automated tools, and other challenges hinder the full utilisation of NLP…

计算与语言 · 计算机科学 2023-06-23 Elias Hossain , Rajib Rana , Niall Higgins , Jeffrey Soar , Prabal Datta Barua , Anthony R. Pisani , Ph. D , Kathryn Turner}

Pre-trained Large Language Models (LLMs) often struggle on out-of-domain datasets like healthcare focused text. We explore specialized pre-training to adapt smaller LLMs to different healthcare datasets. Three methods are assessed:…

计算与语言 · 计算机科学 2024-04-01 Niall Taylor , Dan Schofield , Andrey Kormilitzin , Dan W Joyce , Alejo Nevado-Holgado

Traditional dataset distillation primarily focuses on image representation while often overlooking the important role of labels. In this study, we introduce Label-Augmented Dataset Distillation (LADD), a new dataset distillation framework…

计算机视觉与模式识别 · 计算机科学 2024-09-25 Seoungyoon Kang , Youngsun Lim , Hyunjung Shim

We introduce TeMLM, a set of transparency-first release artifacts for clinical language models. TeMLM unifies provenance, data transparency, modeling transparency, and governance into a single, machine-checkable release bundle. We define an…

Named entity disambiguation (NED), which involves mapping textual mentions to structured entities, is particularly challenging in the medical domain due to the presence of rare entities. Existing approaches are limited by the presence of…

计算与语言 · 计算机科学 2021-10-18 Maya Varma , Laurel Orr , Sen Wu , Megan Leszczynski , Xiao Ling , Christopher Ré

Deploying large language models (LLMs) is challenging because they are memory inefficient and compute-intensive for practical applications. In reaction, researchers train smaller task-specific models by either finetuning with human labels…

Multimodal large language models (MLLMs) have demonstrated strong capabilities in vision-related tasks, capitalizing on their visual semantic comprehension and reasoning capabilities. However, their ability to detect subtle visual spoofing…

计算机视觉与模式识别 · 计算机科学 2025-04-22 Yichen Shi , Yuhao Gao , Yingxin Lai , Hongyang Wang , Jun Feng , Lei He , Jun Wan , Changsheng Chen , Zitong Yu , Xiaochun Cao

Neural networks (NNs) have become the state of the art in many machine learning applications, especially in image and sound processing [1]. The same, although to a lesser extent [2,3], could be said in natural language processing (NLP)…

计算与语言 · 计算机科学 2019-07-30 Luka Gligic , Andrey Kormilitzin , Paul Goldberg , Alejo Nevado-Holgado

Biomedical literature is a rapidly expanding field of science and technology. Classification of biomedical texts is an essential part of biomedicine research, especially in the field of biology. This work proposes the fine-tuned DistilBERT,…

计算与语言 · 计算机科学 2024-04-23 Ziqing Guo

Named entity recognition (NER) stands as a fundamental and pivotal task within the realm of Natural Language Processing. Particularly within the domain of Biomedical Method NER, this task presents notable challenges, stemming from the…

计算与语言 · 计算机科学 2024-07-01 Chen Tang , Bohao Yang , Kun Zhao , Bo Lv , Chenghao Xiao , Frank Guerin , Chenghua Lin

Entity recognition is a critical first step to a number of clinical NLP applications, such as entity linking and relation extraction. We present the first attempt to apply state-of-the-art entity recognition approaches on a newly released…

计算与语言 · 计算机科学 2019-10-04 Kathleen C. Fraser , Isar Nejadgholi , Berry De Bruijn , Muqun Li , Astha LaPlante , Khaldoun Zine El Abidine

The extraction of relevant data from Electronic Health Records (EHRs) is crucial to identifying symptoms and automating epidemiological surveillance processes. By harnessing the vast amount of unstructured text in EHRs, we can detect…

计算与语言 · 计算机科学 2025-02-10 Juliano Genari , Guilherme Tegoni Goedert

An accurate differential diagnosis (DDx) is essential for patient care, shaping therapeutic decisions and influencing outcomes. Recently, Large Language Models (LLMs) have emerged as promising tools to support this process by generating a…

人工智能 · 计算机科学 2025-10-07 Seungseop Lim , Gibaeg Kim , Hyunkyung Lee , Wooseok Han , Jean Seo , Jaehyo Yoo , Eunho Yang

Clinical language models are important for many applications in healthcare, but their development depends on access to extensive clinical text for pretraining. However, obtaining clinical notes from electronic health records (EHRs) at scale…

计算与语言 · 计算机科学 2024-12-02 Jinghui Liu , Anthony Nguyen

The consequences of a healthcare data breach can be devastating for the patients, providers, and payers. The average financial impact of a data breach in recent months has been estimated to be close to USD 10 million. This is especially…

计算与语言 · 计算机科学 2024-07-09 Sanjeet Singh , Shreya Gupta , Niralee Gupta , Naimish Sharma , Lokesh Srivastava , Vibhu Agarwal , Ashutosh Modi

Dataset distillation synthesizes a small dataset such that a model trained on this set approximates the performance of the original dataset. Recent studies on dataset distillation focused primarily on the design of the optimization process,…

计算机视觉与模式识别 · 计算机科学 2024-08-30 Shiguang Wang , Zhongyu Zhang , Jian Cheng

Automated masking of Personally Identifiable Information (PII) is critical for privacy-preserving conversational systems. While current frontier large language models demonstrate strong PII masking capabilities, concerns about data handling…

计算与语言 · 计算机科学 2025-12-23 Prabigya Acharya , Liza Shrestha

EHR systems lack a unified code system forrepresenting medical concepts, which acts asa barrier for the deployment of deep learningmodels in large scale to multiple clinics and hos-pitals. To overcome this problem, we…

计算与语言 · 计算机科学 2022-01-19 Kyunghoon Hur , Jiyoung Lee , Jungwoo Oh , Wesley Price , Young-Hak Kim , Edward Choi

Automatic medical image segmentation plays a critical role in scientific research and medical care. Existing high-performance deep learning methods typically rely on large training datasets with high-quality manual annotations, which are…

图像与视频处理 · 电气工程与系统科学 2021-11-17 Shanshan Wang , Cheng Li , Rongpin Wang , Zaiyi Liu , Meiyun Wang , Hongna Tan , Yaping Wu , Xinfeng Liu , Hui Sun , Rui Yang , Xin Liu , Jie Chen , Huihui Zhou , Ismail Ben Ayed , Hairong Zheng