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Chain-of-Thought (CoT) reasoning enhances the problem-solving ability of large language models (LLMs) but leads to substantial inference overhead, limiting deployment in resource-constrained settings. This paper investigates efficient CoT…

人工智能 · 计算机科学 2025-12-03 Ziqian Bi , Kaijie Chen , Tianyang Wang , Junfeng Hao , Benji Peng , Xinyuan Song

Large Language Models (LLMs) encounter challenges with the unique syntax of specific domains, such as biomolecules. Existing fine-tuning or modality alignment techniques struggle to bridge the domain knowledge gap and understand complex…

生物大分子 · 定量生物学 2024-06-28 Jinzhe Liu , Xiangsheng Huang , Zhuo Chen , Yin Fang

This study investigates the in-context learning capabilities of various decoder-only transformer-based language models with different model sizes and training data, including GPT2, SmolLM2, OpenELM, TinyLlama, Stable LM, and Gemma 2. We…

计算与语言 · 计算机科学 2025-02-24 Yen-Che Hsiao , Abhishek Dutta

Multimodal reasoning stands as a pivotal capability for large vision-language models (LVLMs). The integration with Domain-Specific Languages (DSL), offering precise visual representations, equips these models with the opportunity to execute…

计算与语言 · 计算机科学 2024-02-22 Xueliang Zhao , Xinting Huang , Tingchen Fu , Qintong Li , Shansan Gong , Lemao Liu , Wei Bi , Lingpeng Kong

Goal-oriented de novo molecule design, namely generating molecules with specific property or substructure constraints, is a crucial yet challenging task in drug discovery. Existing methods, such as Bayesian optimization and reinforcement…

计算工程、金融与科学 · 计算机科学 2025-02-28 Chuanliu Fan , Ziqiang Cao , Zicheng Ma , Nan Yu , Yimin Peng , Jun Zhang , Yiqin Gao , Guohong Fu

Question-answering datasets require a broad set of reasoning skills. We show how to use question decompositions to teach language models these broad reasoning skills in a robust fashion. Specifically, we use widely available QDMR…

计算与语言 · 计算机科学 2022-11-07 Harsh Trivedi , Niranjan Balasubramanian , Tushar Khot , Ashish Sabharwal

Molecular Relational Learning (MRL), aiming to understand interactions between molecular pairs, plays a pivotal role in advancing biochemical research. Recently, the adoption of large language models (LLMs), known for their vast knowledge…

定量方法 · 定量生物学 2024-06-11 Junfeng Fang , Shuai Zhang , Chang Wu , Zhengyi Yang , Zhiyuan Liu , Sihang Li , Kun Wang , Wenjie Du , Xiang Wang

Solving Bengali Math Word Problems (MWPs) remains a major challenge in natural language processing (NLP) due to the language's low-resource status and the multi-step reasoning required. Existing models struggle with complex Bengali MWPs,…

计算与语言 · 计算机科学 2025-07-31 Bidyarthi Paul , Jalisha Jashim Era , Mirazur Rahman Zim , Tahmid Sattar Aothoi , Faisal Muhammad Shah

Large language models (LLMs) exhibit strong reasoning abilities, often attributed to few-shot or zero-shot chain-of-thought (CoT) prompting. While effective, these methods require labor-intensive prompt engineering, raising the question of…

计算与语言 · 计算机科学 2025-03-19 Hyunbin Jin , Je Won Yeom , Seunghyun Bae , Taesup Kim

Large language models have consistently struggled with complex reasoning tasks, such as mathematical problem-solving. Investigating the internal reasoning mechanisms of these models can help us design better model architectures and training…

Large Language Models (LLMs) achieve strong performance on natural language tasks but remain unreliable in mathematical reasoning, frequently generating fluent yet logically inconsistent solutions. We present \textbf{NeuroProlog}, a…

人工智能 · 计算机科学 2026-03-05 Pratibha Zunjare , Michael Hsiao

Molecular docking is a key computational tool utilized to predict the binding conformations of small molecules to protein targets, which is fundamental in the design of novel drugs. Despite recent advancements in geometric deep…

生物大分子 · 定量生物学 2023-12-01 Jiaxian Yan , Zaixi Zhang , Kai Zhang , Qi Liu

Recent advances in generative AI have been largely driven by large language models (LLMs), deep neural networks that operate over discrete units called tokens. To represent text, the vast majority of LLMs use words or word fragments as the…

Large language models (LLMs) with Chain-of-thought (CoT) have recently emerged as a powerful technique for eliciting reasoning to improve various downstream tasks. As most research mainly focuses on English, with few explorations in a…

计算与语言 · 计算机科学 2024-07-11 Huiyuan Lai , Malvina Nissim

Multimodal reasoning is a challenging task that requires models to reason across multiple modalities to answer questions. Existing approaches have made progress by incorporating language and visual modalities into a two-stage reasoning…

人工智能 · 计算机科学 2024-07-04 Cheng Tan , Jingxuan Wei , Zhangyang Gao , Linzhuang Sun , Siyuan Li , Ruifeng Guo , Bihui Yu , Stan Z. Li

In this paper, we address the challenging task of multimodal mathematical reasoning by incorporating the ability of "slow thinking" into multimodal large language models (MLLMs). Our core idea is that different levels of reasoning abilities…

DeepSeek R1, and o1 have demonstrated powerful reasoning capabilities in the text domain through stable large-scale reinforcement learning. To enable broader applications, some works have attempted to transfer these capabilities to…

Understanding molecules is key to understanding organisms and driving advances in drug discovery, requiring interdisciplinary knowledge across chemistry and biology. Although large molecular language models have achieved notable success in…

机器学习 · 计算机科学 2025-10-03 Dongki Kim , Wonbin Lee , Sung Ju Hwang

Multimodal Large Language Models (MLLMs) are set to transform how machines process and generate human-like responses by integrating diverse modalities such as text, images, and code. Yet, effectively harnessing their capabilities hinges on…

人工智能 · 计算机科学 2025-04-15 Anwesha Mohanty , Venkatesh Balavadhani Parthasarathy , Arsalan Shahid

Understanding and designing biomolecules, such as proteins and small molecules, is central to advancing drug discovery, synthetic biology and enzyme engineering. Recent breakthroughs in artificial intelligence have revolutionized…