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This paper presents an unsupervised method to learn a neural network, namely an explainer, to interpret a pre-trained convolutional neural network (CNN), i.e., explaining knowledge representations hidden in middle conv-layers of the CNN.…

计算机视觉与模式识别 · 计算机科学 2018-05-22 Quanshi Zhang , Yu Yang , Yuchen Liu , Ying Nian Wu , Song-Chun Zhu

In this paper, we present a study of the recent advancements which have helped bring Transfer Learning to NLP through the use of semi-supervised training. We discuss cutting-edge methods and architectures such as BERT, GPT, ELMo, ULMFit…

计算与语言 · 计算机科学 2019-10-17 Aditya Malte , Pratik Ratadiya

Integrating large language models (LLMs) with knowledge graphs derived from domain-specific data represents an important advancement towards more powerful and factual reasoning. As these models grow more capable, it is crucial to enable…

人工智能 · 计算机科学 2024-04-19 Stefan Dernbach , Khushbu Agarwal , Alejandro Zuniga , Michael Henry , Sutanay Choudhury

Large language models (LLMs) are having transformative impacts across a wide range of scientific fields, particularly in the biomedical sciences. Just as the goal of Natural Language Processing is to understand sequences of words, a major…

基因组学 · 定量生物学 2024-09-24 Gonzalo Benegas , Chengzhong Ye , Carlos Albors , Jianan Canal Li , Yun S. Song

Machine learning-based imaging diagnostics has recently reached or even superseded the level of clinical experts in several clinical domains. However, classification decisions of a trained machine learning system are typically…

Large Language Models (LLMs) excel at intuitive, implicit reasoning. Guiding LLMs to construct thought chains can enhance their deliberate reasoning abilities, but also faces challenges such as hallucination. Knowledge Graphs (KGs) can…

计算与语言 · 计算机科学 2025-03-07 Guangyi Liu , Yongqi Zhang , Yong Li , Quanming Yao

Recent years have seen a proliferation of attention mechanisms and the rise of Transformers in Natural Language Generation (NLG). Previously, state-of-the-art NLG architectures such as RNN and LSTM ran into vanishing gradient problems; as…

计算与语言 · 计算机科学 2021-02-17 M. Onat Topal , Anil Bas , Imke van Heerden

Deep neural networks (DNNs) have achieved remarkable success in radio frequency (RF) fingerprinting for wireless device authentication. However, their practical deployment faces two major limitations: domain shift, where models trained in…

密码学与安全 · 计算机科学 2026-02-04 Tianya Zhao , Junqing Zhang , Haowen Xu , Xiaoyan Sun , Jun Dai , Xuyu Wang

Large scale self-supervised pre-training of Transformer language models has advanced the field of Natural Language Processing and shown promise in cross-application to the biological `languages' of proteins and DNA. Learning effective…

机器学习 · 计算机科学 2021-12-15 Meredith V. Trotter , Cuong Q. Nguyen , Stephen Young , Rob T. Woodruff , Kim M. Branson

Trust and credibility in machine learning models is bolstered by the ability of a model to explain itsdecisions. While explainability of deep learning models is a well-known challenge, a further chal-lenge is clarity of the explanation…

机器学习 · 计算机科学 2020-11-30 hsan Ullah , Andre Rios , Vaibhav Gala , Susan Mckeever

The impact of Transformer-based language models has been unprecedented in Natural Language Processing (NLP). The success of such models has also led to their adoption in other fields including bioinformatics. Taking this into account, this…

机器学习 · 计算机科学 2025-07-21 Nimisha Ghosh , Daniele Santoni , Debaleena Nawn , Eleonora Ottaviani , Giovanni Felici

Pre-trained large language models(LLMs) have attracted increasing attention in biomedical domains due to their success in natural language processing. However, the complex traits and heterogeneity of multi-sources genomics data pose…

Large language models (LLMs) have displayed an impressive ability to harness natural language to perform complex tasks. In this work, we explore whether we can leverage this learned ability to find and explain patterns in data.…

机器学习 · 计算机科学 2023-01-30 Chandan Singh , John X. Morris , Jyoti Aneja , Alexander M. Rush , Jianfeng Gao

While reasoning models are increasingly ubiquitous, the effects of reasoning training on a model's internal mechanisms remain poorly understood. In this work, we introduce transcoder adapters, a technique for learning an interpretable…

机器学习 · 计算机科学 2026-02-25 Nathan Hu , Jake Ward , Thomas Icard , Christopher Potts

In recent years, Graph Neural Networks (GNNs) have become successful in molecular property prediction tasks such as toxicity analysis. However, due to the black-box nature of GNNs, their outputs can be concerning in high-stakes…

机器学习 · 计算机科学 2024-10-22 Yinhan He , Zaiyi Zheng , Patrick Soga , Yaozhen Zhu , yushun Dong , Jundong Li

DNA sequence classification requires not only high predictive accuracy but also the ability to uncover latent site interactions, combinatorial regulation, and epistasis-like higher-order dependencies. Although the standard Transformer…

机器学习 · 计算机科学 2026-03-30 Zhixuan Cao , Yishu Xu , Xuang WU

Deep learning has shown promising performance on various machine learning tasks. Nevertheless, the uninterpretability of deep learning models severely restricts the usage domains that require feature explanations, such as text correction.…

计算与语言 · 计算机科学 2025-03-05 Fanyu Wang , Hangyu Zhu , Zhenping Xie

Pre-trained neural Language Models (PTLM), such as CodeBERT, are recently used in software engineering as models pre-trained on large source code corpora. Their knowledge is transferred to downstream tasks (e.g. code clone detection) via…

软件工程 · 计算机科学 2022-04-20 Divyam Goel , Ramansh Grover , Fatemeh H. Fard

Training convolutional neural networks (CNNs) with back-propagation (BP) is time-consuming and resource-intensive particularly in view of the need to visit the dataset multiple times. In contrast, analytic learning attempts to obtain the…

计算机视觉与模式识别 · 计算机科学 2022-02-15 Huiping Zhuang , Zhiping Lin , Yimin Yang , Kar-Ann Toh

Linking computational natural language processing (NLP) models and neural responses to language in the human brain on the one hand facilitates the effort towards disentangling the neural representations underpinning language perception, on…

计算与语言 · 计算机科学 2023-03-28 Xu Liu , Mengyue Zhou , Gaosheng Shi , Yu Du , Lin Zhao , Zihao Wu , David Liu , Tianming Liu , Xintao Hu