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Biomedical evidence synthesis relies on accurate extraction of methodological, laboratory, and outcome variables from full-text research articles, yet these variables are embedded in complex scientific PDFs that make manual abstraction…

计算与语言 · 计算机科学 2026-01-22 Pouria Mortezaagha , Joseph Shaw , Bowen Sun , Arya Rahgozar

The rapid spread of misinformation in the digital era poses significant challenges to public discourse, necessitating robust and scalable fact-checking solutions. Traditional human-led fact-checking methods, while credible, struggle with…

人工智能 · 计算机科学 2025-06-24 Tam Trinh , Manh Nguyen , Truong-Son Hy

Automated radiology report generation holds immense potential to alleviate the heavy workload of radiologists. Despite the formidable vision-language capabilities of recent Multimodal Large Language Models (MLLMs), their clinical deployment…

人工智能 · 计算机科学 2026-03-17 Tuoshi Qi , Shenshen Bu , Yingfei Xiang , Zhiming Dai

Extracting patient information from unstructured text is a critical task in health decision-support and clinical research. Large language models (LLMs) have shown the potential to accelerate clinical curation via few-shot in-context…

计算与语言 · 计算机科学 2023-06-21 Zelalem Gero , Chandan Singh , Hao Cheng , Tristan Naumann , Michel Galley , Jianfeng Gao , Hoifung Poon

Endometriosis ultrasound reports are often unstructured free-text documents that require manual abstraction for downstream tasks such as analytics, machine learning model training, and clinical auditing. We present \textbf{EndoExtract}, an…

We created this EVIDENCEMINER system for automatic textual evidence mining in COVID-19 literature. EVIDENCEMINER is a web-based system that lets users query a natural language statement and automatically retrieves textual evidence from a…

信息检索 · 计算机科学 2020-05-01 Xuan Wang , Weili Liu , Aabhas Chauhan , Yingjun Guan , Jiawei Han

Recent advances in large language models (LLMs) have enabled promising progress in diagnosis prediction from electronic health records (EHRs). However, existing LLM-based approaches tend to overfit to historically observed diagnoses, often…

计算与语言 · 计算机科学 2026-04-14 Hengyu Zhang , Xuyun Zhang , Pengxiang Zhan , Linhao Luo , Hang Lv , Yanchao Tan , Shirui Pan , Carl Yang

Deep research systems are widely used for multi-step web research, analysis, and cross-source synthesis, yet their evaluation remains challenging. Existing benchmarks often require annotation-intensive task construction, rely on static…

计算与语言 · 计算机科学 2026-01-15 Yibo Wang , Lei Wang , Yue Deng , Keming Wu , Yao Xiao , Huanjin Yao , Liwei Kang , Hai Ye , Yongcheng Jing , Lidong Bing

This study presents OpenExtract, an open-source pipeline for automated data extraction in large-scale systematic literature reviews. The pipeline queries large language models (LLMs) to predict data entries based on relevant sections of…

Disease screening is critical for early detection and timely intervention in clinical practice. However, most current screening models for medical images suffer from limited interpretability and suboptimal performance. They often lack…

计算机视觉与模式识别 · 计算机科学 2026-05-15 Chenyu Lian , Hong-Yu Zhou , Jing Qin

While humans can extract information from unstructured text with high precision and recall, this is often too time-consuming to be practical. Automated approaches, on the other hand, produce nearly-immediate results, but may not be reliable…

计算与语言 · 计算机科学 2023-02-21 Bradley Butcher , Miri Zilka , Darren Cook , Jiri Hron , Adrian Weller

Because of the increasing number of electronic data, designing efficient tools to retrieve and exploit documents is a major challenge. Current search engines suffer from two main drawbacks: there is limited interaction with the list of…

信息检索 · 计算机科学 2010-12-09 Sylvie Ranwez , Vincent Ranwez , Mohameth-François Sy , Jacky Montmain , Michel Crampes

The rapid growth of scientific literature has made it increasingly difficult for researchers to efficiently discover, evaluate, and synthesize relevant work. Recent advances in multi-agent large language models (LLMs) have demonstrated…

计算与语言 · 计算机科学 2026-04-08 Komal Kumar , Aman Chadha , Salman Khan , Fahad Shahbaz Khan , Hisham Cholakkal

Objective:Develop and validate an algorithm for analyzing the layout of PDF clinical documents to improve the performance of downstream natural language processing tasks. Materials and Methods: We designed an algorithm to process clinical…

Attribution and fact verification are critical challenges in natural language processing for assessing information reliability. While automated systems and Large Language Models (LLMs) aim to retrieve and select concise evidence to support…

计算与语言 · 计算机科学 2026-01-30 Guy Alt , Eran Hirsch , Serwar Basch , Ido Dagan , Oren Glickman

Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…

分子网络 · 定量生物学 2017-06-19 Kai-Wen Liang , Qinsi Wang , Cheryl Telmer , Divyaa Ravichandran , Peter Spirtes , Natasa Miskov-Zivanov

Text analytics has traditionally required specialized knowledge in Natural Language Processing (NLP) or text analysis, which presents a barrier for entry-level analysts. Recent advances in large language models (LLMs) have changed the…

计算与语言 · 计算机科学 2026-05-11 Sam Yu-Te Lee , Chenyang Ji , Shicheng Wen , Lifu Huang , Dongyu Liu , Kwan-Liu Ma

Interactive articles help readers engage with complex ideas through exploration, yet creating them remains costly, requiring both domain expertise and web development skills. Recent LLM-based agents can automate content creation, but…

计算与语言 · 计算机科学 2026-03-03 Yinghao Tang , Yupeng Xie , Yingchaojie Feng , Tingfeng Lan , Wei Chen

Fact verification (FV) aims to assess the veracity of a claim based on relevant evidence. The traditional approach for automated FV includes a three-part pipeline relying on short evidence snippets and encoder-only inference models. More…

计算与语言 · 计算机科学 2025-02-21 Juraj Vladika , Ivana Hacajová , Florian Matthes

We study the task of automatically finding evidence relevant to hypotheses in biomedical papers. Finding relevant evidence is an important step when researchers investigate scientific hypotheses. We introduce EvidenceBench to measure models…

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