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Accurate diagnosis and treatment of complex diseases require integrating histological, molecular, and clinical data, yet in practice these modalities are often incomplete owing to tissue scarcity, assay cost, and workflow constraints.…

计算机视觉与模式识别 · 计算机科学 2026-04-07 Jinxi Xiang , Mingjie Li , Siyu Hou , Yijiang Chen , Xiangde Luo , Yuanfeng Ji , Xiang Zhou , Ehsan Adeli , Akshay Chaudhari , Curtis P. Langlotz , Kilian M. Pohl , Ruijiang Li

Scarcity of labeled histopathology data limits the applicability of deep learning methods to under-profiled cancer types and labels. Transfer learning allows researchers to overcome the limitations of small datasets by pre-training machine…

计算机视觉与模式识别 · 计算机科学 2022-04-21 Anna Yeaton , Rahul G. Krishnan , Rebecca Mieloszyk , David Alvarez-Melis , Grace Huynh

Histopathology image analysis is fundamental to digital pathology, with hematoxylin and eosin (H&E) staining as the gold standard for diagnostic and prognostic assessments. While H&E imaging effectively highlights cellular and tissue…

图像与视频处理 · 电气工程与系统科学 2025-11-18 Yao Du , Jiaxin Zhuang , Xiaoyu Zheng , Jing Cong , Limei Guo , Chao He , Lin Luo , Xiaomeng Li

Spatially resolved transcriptomics represents a significant advancement in single-cell analysis by offering both gene expression data and their corresponding physical locations. However, this high degree of spatial resolution entails a…

基因组学 · 定量生物学 2024-03-19 Xiaoyu Li , Wenwen Min , Shunfang Wang , Changmiao Wang , Taosheng Xu

Histopathology, particularly hematoxylin and eosin (H\&E) staining, plays a critical role in diagnosing and characterizing pathological conditions by highlighting tissue morphology. However, H\&E-stained images inherently lack molecular…

计算工程、金融与科学 · 计算机科学 2025-01-28 Qing Wang , Wen-jie Chen , Bo Li , Jing Su , Guangyu Wang , Qianqian Song

Recommender Systems (RS) have employed knowledge distillation which is a model compression technique training a compact student model with the knowledge transferred from a pre-trained large teacher model. Recent work has shown that…

机器学习 · 计算机科学 2021-06-17 SeongKu Kang , Junyoung Hwang , Wonbin Kweon , Hwanjo Yu

Spatial transcriptomics has revolutionized tissue analysis by simultaneously mapping gene expression, spatial topography, and histological context across consecutive tissue sections, enabling systematic investigation of spatial…

应用统计 · 统计学 2025-10-24 Meng Zhou , Shuangge Ma , Mengyun Wu

Spatial transcriptomics (ST) is an emerging technology that enables researchers to investigate the molecular relationships underlying tissue morphology. However, acquiring ST data remains prohibitively expensive, and traditional fixed-grid…

Spatial transcriptomics (ST) is a novel technique that simultaneously captures pathological images and gene expression profiling with spatial coordinates. Since ST is closely related to pathological features such as disease subtypes, it may…

计算机视觉与模式识别 · 计算机科学 2025-03-11 Kazuya Nishimura , Ryoma Bise , Yasuhiro Kojima

In recent years, pre-trained multimodal large models have attracted widespread attention due to their outstanding performance in various multimodal applications. Nonetheless, the extensive computational resources and vast datasets required…

计算机视觉与模式识别 · 计算机科学 2024-04-18 Zhengyang Liang , Meiyu Liang , Wei Huang , Yawen Li , Zhe Xue

Diffusion models achieve strong generation quality, diversity, and distribution coverage, but their performance often comes with expensive inference. In this work, we propose Stochastic Transition-Map Distillation (STMD), a teacher-free…

机器学习 · 计算机科学 2026-05-11 George Rapakoulias , Peter Garud , Lingjiong Zhu , Panagiotis Tsiotras

Model compression and knowledge distillation have been successfully applied for cross-architecture and cross-domain transfer learning. However, a key requirement is that training examples are in correspondence across the domains. We show…

计算机视觉与模式识别 · 计算机科学 2017-08-30 Jong-Chyi Su , Subhransu Maji

Spatial transcriptomics (ST) maps gene expression within tissue at individual spots, making it a valuable resource for multimodal representation learning. Additionally, ST inherently contains rich hierarchical information both across and…

计算机视觉与模式识别 · 计算机科学 2025-03-04 Xulin Chen , Junzhou Huang

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

定量方法 · 定量生物学 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

Multi-class colorectal tissue classification is a challenging problem that is typically addressed in a setting, where it is assumed that ample amounts of training data is available. However, manual annotation of fine-grained colorectal…

计算机视觉与模式识别 · 计算机科学 2024-01-03 Dmitry Demidov , Roba Al Majzoub , Amandeep Kumar , Fahad Khan

RGB cameras excel at capturing rich texture details with high spatial resolution, whereas event cameras offer exceptional temporal resolution and a high dynamic range (HDR). Leveraging their complementary strengths can substantially enhance…

计算机视觉与模式识别 · 计算机科学 2025-10-23 Yao Deng , Xian Zhong , Wenxuan Liu , Zhaofei Yu , Jingling Yuan , Tiejun Huang

Histology imaging is an important tool in medical diagnosis and research, enabling the examination of tissue structure and composition at the microscopic level. Understanding the underlying molecular mechanisms of tissue architecture is…

计算机视觉与模式识别 · 计算机科学 2023-10-30 Ronald Xie , Kuan Pang , Sai W. Chung , Catia T. Perciani , Sonya A. MacParland , Bo Wang , Gary D. Bader

Spatial transcriptomics aims to connect high-resolution histology images with spatially resolved gene expression. To achieve better performance on downstream tasks such as gene expression prediction, large-scale pre-training is required to…

计算机视觉与模式识别 · 计算机科学 2025-09-23 Jiahe Qian , Yaoyu Fang , Ziqiao Weng , Xinkun Wang , Lee A. Cooper , Bo Zhou

Structured Illumination Microscopy (SIM) enables rapid, high-contrast optical sectioning of fresh tissue without staining or physical sectioning, making it promising for intraoperative and point-of-care diagnostics. Recent foundation and…

Domain shift is a significant problem in histopathology. There can be large differences in data characteristics of whole-slide images between medical centers and scanners, making generalization of deep learning to unseen data difficult. To…

计算机视觉与模式识别 · 计算机科学 2019-09-27 Karin Stacke , Gabriel Eilertsen , Jonas Unger , Claes Lundström