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Deep generative models have been praised for their ability to learn smooth latent representation of images, text, and audio, which can then be used to generate new, plausible data. However, current generative models are unable to work with…

Variational autoencoders (VAEs) are powerful generative models with the salient ability to perform inference. Here, we introduce a quantum variational autoencoder (QVAE): a VAE whose latent generative process is implemented as a quantum…

Deep generative models are attracting great attention as a new promising approach for molecular design. All models reported so far are based on either variational autoencoder (VAE) or generative adversarial network (GAN). Here we propose a…

化学物理 · 物理学 2019-12-13 Seung Hwan Hong , Jaechang Lim , Seongok Ryu , Woo Youn Kim

We introduce Quantum Molecular Autoencoder (MolQAE), the first quantum autoencoder to leverage the complete molecular structures. MolQAE uniquely maps SMILES strings directly to quantum states using parameterized rotation gates, preserving…

量子物理 · 物理学 2025-06-02 Yi Pan , Hanqi Jiang , Wei Ruan , Dajiang Zhu , Xiang Li , Yohannes Abate , Yingfeng Wang , Tianming Liu

Molecular representation learning is crucial for the problem of molecular property prediction, where graph neural networks (GNNs) serve as an effective solution due to their structure modeling capabilities. Since labeled data is often…

机器学习 · 计算机科学 2023-09-26 Cameron Diao , Kaixiong Zhou , Zirui Liu , Xiao Huang , Xia Hu

Recently, molecule generation using deep learning has been actively investigated in drug discovery. In this field, Transformer and VAE are widely used as powerful models, but they are rarely used in combination due to structural and…

生物大分子 · 定量生物学 2024-04-08 Yasuhiro Yoshikai , Tadahaya Mizuno , Shumpei Nemoto , Hiroyuki Kusuhara

Although generative models hold promise for discovering molecules with optimized desired properties, they often fail to suggest synthesizable molecules that improve upon the known molecules seen in training. We find that a key limitation is…

机器学习 · 计算机科学 2025-01-07 Evan R. Antoniuk , Peggy Li , Nathan Keilbart , Stephen Weitzner , Bhavya Kailkhura , Anna M. Hiszpanski

Molecule generation is to design new molecules with specific chemical properties and further to optimize the desired chemical properties. Following previous work, we encode molecules into continuous vectors in the latent space and then…

机器学习 · 计算机科学 2020-01-16 Chaochao Yan , Sheng Wang , Jinyu Yang , Tingyang Xu , Junzhou Huang

The de novo generation of molecules with desirable properties is a critical challenge, where diffusion models are computationally intensive and autoregressive models struggle with error propagation. In this work, we introduce the Graph…

机器学习 · 计算机科学 2025-12-03 Haozhuo Zheng , Cheng Wang , Yang Liu

The generation of molecules with desired properties has become increasingly popular, revolutionizing the way scientists design molecular structures and providing valuable support for chemical and drug design. However, despite the potential…

机器学习 · 计算机科学 2024-03-05 Yin Fang , Ningyu Zhang , Zhuo Chen , Lingbing Guo , Xiaohui Fan , Huajun Chen

Machine learning has been increasingly utilized in the field of biomedical research to accelerate the drug discovery process. In recent years, the emergence of quantum computing has been followed by extensive exploration of quantum machine…

Conformation generation, also known as molecular unfolding (MU), is a crucial step in structure-based drug design, remaining a challenging combinatorial optimization problem. Quantum annealing (QA) has shown great potential for solving…

Modeling joint probability distributions is an important task in a wide variety of fields. One popular technique for this employs a family of multivariate distributions with uniform marginals called copulas. While the theory of modeling…

Quantum machine learning has recently attracted much attention from the community of quantum computing. In this paper, we explore the ability of generative adversarial networks (GANs) based on quantum computing. More specifically, we…

量子物理 · 物理学 2020-06-23 Haozhen Situ , Zhimin He , Yuyi Wang , Lvzhou Li , Shenggen Zheng

Learning interpretable representations of data remains a central challenge in deep learning. When training a deep generative model, the observed data are often associated with certain categorical labels, and, in parallel with learning to…

机器学习 · 计算机科学 2019-10-01 Yifan Xue , Michael Ding , Xinghua Lu

The drug design process currently requires considerable time and resources to develop each new compound that enters the market. This work develops an application of hybrid quantum generative models based on the integration of parametrized…

Designing new molecules with a set of predefined properties is a core problem in modern drug discovery and development. There is a growing need for de-novo design methods that would address this problem. We present MolecularRNN, the graph…

机器学习 · 计算机科学 2019-06-03 Mariya Popova , Mykhailo Shvets , Junier Oliva , Olexandr Isayev

Are multi-layer parameterized quantum circuits (MPQCs) more expressive than classical neural networks (NNs)? How, why, and in what aspects? In this work, we survey and develop intuitive insights into the expressive power of MPQCs in…

量子物理 · 物理学 2022-12-14 Pengyuan Zhai

Learning discrete representations with vector quantization (VQ) has emerged as a powerful approach in various generative models. However, most VQ-based models rely on a single, fixed-rate codebook, requiring extensive retraining for new…

机器学习 · 计算机科学 2025-02-03 Jiwan Seo , Joonhyuk Kang

The increasing success of classical generative adversarial networks (GANs) has inspired several quantum versions of GANs. Fully quantum mechanical applications of such quantum GANs have been limited to one- and two-qubit systems. In this…

量子物理 · 物理学 2022-09-28 S. E. Rasmussen , N. T. Zinner