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Many spreading processes in our real-life can be considered as a complex contagion, and the linear threshold (LT) model is often applied as a very representative model for this mechanism. Despite its intensive usage, the LT model suffers…

物理与社会 · 物理学 2020-08-18 Yijun Ran , Xiaomin Deng , Xiaomeng Wang , Tao Jia

Time-limited states characterise many dynamical processes on networks: disease infected individuals recover after some time, people forget news spreading on social networks, or passengers may not wait forever for a connection. These…

物理与社会 · 物理学 2023-06-13 Arash Badie-Modiri , Márton Karsai , Mikko Kivelä

When pandemics like COVID-19 spread around the world, the rapidly evolving situation compels officials and executives to take prompt decisions and adapt policies depending on the current state of the disease. In this context, it is crucial…

In the post-pandemic era of COVID-19, hospitalization remains a primary public health concern and wastewater surveillance has become an important tool for monitoring its dynamics at the level of community. However, there is usually no…

统计方法学 · 统计学 2026-01-14 K. Ken Peng , Charmaine B. Dean , Robert Delatolla , X. Joan Hu , Elizabeth Renouf

Early and accurate detection of anomalies in time series data is critical, given the significant risks associated with false or missed detections. While MLP-based mixer models have shown promise in time series analysis, they lack a…

机器学习 · 计算机科学 2025-06-03 Md Mahmuddun Nabi Murad , Yasin Yilmaz

Factors such as non-uniform definitions of mortality, uncertainty in disease prevalence, and biased sampling complicate the quantification of fatality during an epidemic. Regardless of the employed fatality measure, the infected population…

定量方法 · 定量生物学 2021-12-28 Lucas Böttcher , Maria D'Orsogna , Tom Chou

A multiple objective space-time forecasting approach is presented involving cyclical curve log-regression, and multivariate time series spatial residual correlation analysis. Specifically, the mean quadratic loss function is minimized in…

机器学习 · 统计学 2021-03-30 A. Torres-Signes , M. P. Frías , M. D. Ruiz-Medina

To accurately predict the regional spread of Covid-19 infection, this study proposes a novel hybrid model which combines a Long short-term memory (LSTM) artificial recurrent neural network with dynamic behavioral models. Several factors and…

物理与社会 · 物理学 2022-04-08 Seid Miad Zandavi , Taha Hossein Rashidi , Fatemeh Vafaee

Monitoring the Covid19 pandemic constitutes a critical societal stake that received considerable research efforts. The intensity of the pandemic on a given territory is efficiently measured by the reproduction number, quantifying the rate…

机器学习 · 计算机科学 2023-04-19 Gersende Fort , Barbara Pascal , Patrice Abry , Nelly Pustelnik

In this paper, we introduce a new control-theoretic paradigm for mitigating the spread of a virus. To this end, our discrete-time controller, aims to reduce the number of new daily deaths, and consequently, the cumulative number of deaths.…

种群与进化 · 定量生物学 2020-08-17 Kevin Burke , B. Ross Barmish

The presence of erratic or unstable paths in standard kinetic Monte Carlo simulations significantly undermines the accurate simulation and sampling of transition pathways. While typically reliable methods, such as the Gillespie algorithm,…

统计力学 · 物理学 2024-12-03 Elad Korngut , Ohad Vilk , Michael Assaf

The present paper introduces a data-driven framework for describing the time-varying nature of an SIRD model in the context of COVID-19. By embedding a rolling regression in a mixed integer bilevel nonlinear programming problem, our aim is…

种群与进化 · 定量生物学 2021-03-04 Javier Rubio-Herrero , Yuchen Wang

We propose a density-valued vector autoregressive model with latent factors for multivariate time series of density functions. Motivated by weekly regional distributions of SARS-CoV-2 cycle threshold (Ct) values in Brazil, we study their…

统计方法学 · 统计学 2026-04-29 Yasumasa Matsuda , Michel F. C. Haddad

Understanding the processes that influence groundwater levels is crucial for forecasting and responding to hazards such as groundwater droughts. Mixed models, which combine a fixed mean, expressed using independent predictors, with…

统计方法学 · 统计学 2025-12-25 Jakub J. Pypkowski , Adam M. Sykulski , James S. Martin , Ben P. Marchant

This paper extends the canonical model of epidemiology, the SIRD model, to allow for time-varying parameters for real-time measurement and prediction of the trajectory of the Covid-19 pandemic. Time variation in model parameters is captured…

计量经济学 · 经济学 2023-02-01 Cem Cakmakli , Yasin Simsek

COVID-19 related deaths underestimate the pandemic burden on mortality because they suffer from completeness and accuracy issues. Excess mortality is a popular alternative, as it compares observed with expected deaths based on the…

Understanding the spatio-temporal patterns of the coronavirus disease 2019 (COVID-19) is essential to construct public health interventions. Spatially referenced data can provide richer opportunities to understand the mechanism of the…

统计方法学 · 统计学 2022-07-15 Jaewoo Park , Seorim Yi , Won Chang , Jorge Mateu

Susceptible-Invective-Recovered (SIR) mathematical models are in high demand due to the COVID-19 pandemic. They are used in their standard formulation, or through the many variants, trying to fit and hopefully predict the number of new…

种群与进化 · 定量生物学 2020-05-19 Ben-Hur Francisco Cardoso , Sebastián Gonçalves

Mechanistic mathematical models of within-host viral dynamics are tools for understanding how a virus' biology and its interaction with the immune system shape the infectivity of a host. The biology of the process is encoded by the…

应用统计 · 统计学 2025-12-11 Dylan J. Morris , Lauren Kennedy , Andrew J. Black

The COVID-19 pandemic has posed significant challenges in modeling its complex epidemic transmissions, infection and contagion, which are very different from known epidemics. The challenges in quantifying COVID-19 complexities include…

机器学习 · 统计学 2022-04-06 Qing Liu , Longbing Cao