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A central goal in systems biology and drug discovery is to predict the transcriptional response of cells to perturbations. This task is challenging due to the noisy and sparse nature of single-cell measurements, as well as the fact that…

定量方法 · 定量生物学 2026-02-10 Chenglei Yu , Chuanrui Wang , Bangyan Liao , Tailin Wu

In this work, we introduce CellxPert, a scalable multimodal foundation model that unifies single-cell and spatial multi-omics within a common representation space. CellxPert jointly encodes transcriptomic (scRNA-seq),…

基因组学 · 定量生物学 2026-05-05 Andac Demir , Erik W. Anderson , Jeremy L. Jenkins , Srayanta Mukherjee

Diffusion Policy is a powerful technique tool for learning end-to-end visuomotor robot control. It is expected that Diffusion Policy possesses scalability, a key attribute for deep neural networks, typically suggesting that increasing model…

机器人学 · 计算机科学 2024-11-15 Minjie Zhu , Yichen Zhu , Jinming Li , Junjie Wen , Zhiyuan Xu , Ning Liu , Ran Cheng , Chaomin Shen , Yaxin Peng , Feifei Feng , Jian Tang

Imitation learning is an intuitive approach for teaching motion to robotic systems. Although previous studies have proposed various methods to model demonstrated movement primitives, one of the limitations of existing methods is that the…

机器人学 · 计算机科学 2020-09-24 Takayuki Osa , Shuhei Ikemoto

Conditional Autoencoders (CAEs) offer a flexible, interpretable approach for estimating latent asset-pricing factors from firm characteristics. However, existing studies usually limit the latent factor dimension to around K=5 due to…

投资组合管理 · 定量金融 2025-11-24 Ryan Engel , Yu Chen , Pawel Polak , Ioana Boier

Extensive experimental evidence highlight that scalar turbulence exhibits anomalous diffusion and stronger intermittency levels at small scales compared to that in fluid turbulence. This renders the corresponding subgrid-scale dynamics…

流体动力学 · 物理学 2024-06-19 S. Hadi Seyedi , Ali Akhavan-Safaei , Mohsen Zayernouri

We introduce Timer-S1, a strong Mixture-of-Experts (MoE) time series foundation model with 8.3B total parameters, 0.75B activated parameters for each token, and a context length of 11.5K. To overcome the scalability bottleneck in existing…

人工智能 · 计算机科学 2026-04-10 Yong Liu , Xingjian Su , Shiyu Wang , Haoran Zhang , Haixuan Liu , Yuxuan Wang , Zhou Ye , Yang Xiang , Jianmin Wang , Mingsheng Long

Next location prediction is a key task in human mobility analysis, crucial for applications like smart city resource allocation and personalized navigation services. However, existing methods face two significant challenges: first, they…

机器学习 · 计算机科学 2025-09-16 Yuqian Wu , Yuhong Peng , Jiapeng Yu , Xiangyu Liu , Zeting Yan , Kang Lin , Weifeng Su , Bingqing Qu , Raymond Lee , Dingqi Yang

We study causal discovery from a single observed sequence of discrete events generated by a stochastic process, as encountered in vehicle logs, manufacturing systems, or patient trajectories. This regime is particularly challenging due to…

机器学习 · 计算机科学 2026-03-18 Hugo Math , Rainer Lienhart

Recent breakthroughs in self-supervised learning have enabled the use of large unlabeled datasets to train visual foundation models that can generalize to a variety of downstream tasks. While this training paradigm is well suited for the…

The transport of scalar quantities passively advected by velocity fields with a small-scale component can be modeled at meso-scale level by means of an effective drift and an effective diffusivity, which can be determined by means of…

混沌动力学 · 物理学 2009-11-11 M. Cencini , A. Mazzino , S. Musacchio , A. Vulpiani

Driven by steady progress in deep generative modeling, simulation-based inference (SBI) has emerged as the workhorse for inferring the parameters of stochastic simulators. However, recent work has demonstrated that model misspecification…

Metropolitan scale vehicular traffic modeling is used by a variety of private and public sector urban mobility stakeholders to inform the design and operations of road networks. High-resolution stochastic traffic simulators are increasingly…

多智能体系统 · 计算机科学 2021-09-24 Neha Arora , Yi-fan Chen , Sanjay Ganapathy , Yechen Li , Ziheng Lin , Carolina Osorio , Andrew Tomkins , Iveel Tsogsuren

Predicting how genetic perturbations change cellular state is a core problem for building controllable models of gene regulation. Perturbations targeting the same gene can produce different transcriptional responses depending on their…

基因组学 · 定量生物学 2026-02-12 Boyang Fu , George Dasoulas , Sameer Gabbita , Xiang Lin , Shanghua Gao , Xiaorui Su , Soumya Ghosh , Marinka Zitnik

It is now possible to conduct large scale perturbation screens with complex readout modalities, such as different molecular profiles or high content cell images. While these open the way for systematic dissection of causal cell circuits,…

基因组学 · 定量生物学 2025-01-27 Jayoung Ryu , Charlotte Bunne , Luca Pinello , Aviv Regev , Romain Lopez

Traditionally, data selection has been studied in settings where all samples from prospective sources are fully revealed to a machine learning developer. However, in practical data exchange scenarios, data providers often reveal only a…

机器学习 · 计算机科学 2023-07-06 Feiyang Kang , Hoang Anh Just , Anit Kumar Sahu , Ruoxi Jia

Plateaus, where an agent's performance stagnates at a suboptimal level, are a common problem in deep on-policy RL. Focusing on PPO due to its widespread adoption, we show that plateaus in certain regimes arise not because of known…

机器学习 · 计算机科学 2026-03-09 Michael Beukman , Khimya Khetarpal , Zeyu Zheng , Will Dabney , Jakob Foerster , Michael Dennis , Clare Lyle

Various kinetic Monte Carlo algorithms become inefficient when some of the population sizes in a system are large, which gives rise to a large number of reaction events per unit time. Here, we present a new acceleration algorithm based on…

定量方法 · 定量生物学 2019-07-24 Yen Ting Lin , Song Feng , William S. Hlavacek

The chemical space of drug-like molecules is vast, motivating the development of generative models that must learn broad chemical distributions, enable conditional generation by capturing structure-property representations, and provide fast…

Scale has become a main ingredient in obtaining strong machine learning models. As a result, understanding a model's scaling properties is key to effectively designing both the right training setup as well as future generations of…

机器学习 · 计算机科学 2024-10-18 Alexander Hägele , Elie Bakouch , Atli Kosson , Loubna Ben Allal , Leandro Von Werra , Martin Jaggi