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Background: Encouraged by the success of pretrained Transformer models in many natural language processing tasks, their use for International Classification of Diseases (ICD) coding tasks is now actively being explored. In this study, we…

Large language models (LLMs) have achieved remarkable performance on diverse benchmarks, yet existing evaluation practices largely rely on coarse summary metrics that obscure underlying reasoning abilities. In this work, we propose novel…

Although recent advances in scaling large language models (LLMs) have resulted in improvements on many NLP tasks, it remains unclear whether these models trained primarily with general web text are the right tool in highly specialized,…

We address the task of hierarchical multi-label classification (HMC) of scientific documents at an industrial scale, where hundreds of thousands of documents must be classified across thousands of dynamic labels. The rapid growth of…

Medical coding translates free-text clinical documentation into standardized codes drawn from classification systems that contain tens of thousands of entries and are updated annually. It is central to billing, clinical research, and…

Automated international classification of diseases (ICD) coding aims to assign multiple disease codes to clinical documents and plays a critical role in healthcare informatics. However, its performance is hindered by the extreme long-tail…

In-Context Learning (ICL) is an emergent capability of Large Language Models (LLMs). Only a few demonstrations enable LLMs to be used as blackbox for new tasks. Previous studies have shown that using LLMs' outputs as labels is effective in…

Traditional supervised 3D medical image segmentation models need voxel-level annotations, which require huge human effort, time, and cost. Semi-supervised learning (SSL) addresses this limitation of supervised learning by facilitating…

Psychological assessments commonly rely on rating-scale items, which require respondents to condense complex experiences into predefined categories. Although rich, unstructured text is often captured alongside these scales, it rarely…

Classifying patents by their relevance to the UN Sustainable Development Goals (SDGs) is crucial for tracking how innovation addresses global challenges. However, the absence of a large, labeled dataset limits the use of supervised…

Demonstration ordering, which is an important strategy for in-context learning (ICL), can significantly affects the performance of large language models (LLMs). However, most of the current approaches of ordering require high computational…

Digital individual participant data (IPD) from clinical trials are increasingly distributed for potential scientific reuse. The identification of available IPD, however, requires interpretations of textual data-sharing statements (DSS) in…

ICD Coding aims to assign a wide range of medical codes to a medical text document, which is a popular and challenging task in the healthcare domain. To alleviate the problems of long-tail distribution and the lack of annotations of…

In-Context Learning (ICL) has emerged as a promising solution to enhance the code generation capabilities of Large Language Models (LLMs), which incorporates code examples inside the prompt to let LLMs learn from demonstrations. However,…

Labeling training datasets has become a key barrier to building medical machine learning models. One strategy is to generate training labels programmatically, for example by applying natural language processing pipelines to text reports…

Large Language Models (LLMs) offer new potential for automating documentation-to-code traceability, yet their capabilities remain underexplored. We present a comprehensive evaluation of LLMs (Claude 3.5 Sonnet, GPT-4o, and o3-mini) in…

In-context learning (ICL) is a few-shot learning paradigm that involves learning mappings through input-output pairs and appropriately applying them to new instances. Despite the remarkable ICL capabilities demonstrated by Large Language…

Existing Machine Learning approaches for local citation recommendation directly map or translate a query, which is typically a claim or an entity mention, to citation-worthy research papers. Within such a formulation, it is challenging to…

Automating the decision of whether a code change requires manual review is vital for maintaining software quality in modern development workflows. However, the emergence of new programming languages and frameworks creates a critical…

Semantic segmentation of various tissue and nuclei types in histology images is fundamental to many downstream tasks in the area of computational pathology (CPath). In recent years, Deep Learning (DL) methods have been shown to perform well…