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Advancements in artificial intelligence for molecular science are necessitating a paradigm shift from purely data-driven predictions to knowledge-guided computational reasoning. Existing molecular models are predominantly proprietary,…

机器学习 · 计算机科学 2026-03-16 Pengfei Liu , Shuang Ge , Jun Tao , Zhixiang Ren

While automated chemical tools excel at specific tasks, they have struggled to capture the strategic thinking that characterizes expert chemical reasoning. Here we demonstrate that large language models (LLMs) can serve as powerful tools…

人工智能 · 计算机科学 2025-07-25 Andres M Bran , Theo A Neukomm , Daniel P Armstrong , Zlatko Jončev , Philippe Schwaller

Grounded theory offers deep insights from qualitative data, but its reliance on expert-intensive manual coding presents a major scalability bottleneck. Existing computational tools either fail on full automation or lack flexible schema…

计算与语言 · 计算机科学 2026-01-21 Xinyu Pi , Qisen Yang , Chuong Nguyen

Atomized chemical knowledge, such as functional group information of molecules and reactions, plays a pivotal intermediate role in the reasoning process that connects molecular structures with their properties and reactivities. While large…

计算工程、金融与科学 · 计算机科学 2026-04-15 Zihan Zhao , Ziping Wan , Lu Chen , Xuanze Lin , Shiyang Yu , Situo Zhang , Da Ma , Zichen Zhu , Danyang Zhang , Huayang Wang , Zhongyang Dai , Liyang Wen , Bo Chen , Xin Chen , Kai Yu

Large Language Models (LLMs) have demonstrated impressive progress in complex reasoning tasks, largely driven by the Chain-of-Thought (CoT) paradigm, which decomposes difficult problems into intermediate steps. However, CoT reasoning…

符号计算 · 计算机科学 2026-05-26 Rui Wang , Zeming Wei , Yihao Zhang , Xiaokun Luan

While large language models (LLMs) with Chain-of-Thought (CoT) reasoning excel in mathematics and coding, their potential for systematic reasoning in chemistry, a domain demanding rigorous structural analysis for real-world tasks like drug…

人工智能 · 计算机科学 2026-01-08 Hao Li , He Cao , Bin Feng , Yanjun Shao , Xiangru Tang , Zhiyuan Yan , Li Yuan , Yonghong Tian , Yu Li

Reasoning is a hallmark of human intelligence, enabling adaptive decision-making in complex and unfamiliar scenarios. In contrast, machine intelligence remains bound to training data, lacking the ability to dynamically refine solutions at…

计算机视觉与模式识别 · 计算机科学 2025-06-30 Shaheer U. Saeed , Yipei Wang , Veeru Kasivisvanathan , Brian R. Davidson , Matthew J. Clarkson , Yipeng Hu , Daniel C. Alexander

Chemical reasoning inherently integrates visual, textual, and symbolic modalities, yet existing benchmarks rarely capture this complexity, often relying on simple image-text pairs with limited chemical semantics. As a result, the actual…

人工智能 · 计算机科学 2025-11-25 Zhiyuan Huang , Baichuan Yang , Zikun He , Yanhong Wu , Fang Hongyu , Zhenhe Liu , Lin Dongsheng , Bing Su

Emerging reasoning models hold promise for automating scientific discovery. However, their training is hindered by a critical supervision gap: experimental outcomes are abundant, whereas intermediate reasoning steps are rarely documented at…

生物大分子 · 定量生物学 2026-03-24 Zequn Liu , Kehan Wu , Shufang Xie , Zekun Guo , Wei Zhang , Tao Qin , Renhe Liu , Yingce Xia

Drug toxicity remains a major challenge in pharmaceutical development. Recent machine learning models have improved in silico toxicity prediction, but their reliance on annotated data and lack of interpretability limit their applicability.…

机器学习 · 计算机科学 2025-11-06 Jueon Park , Yein Park , Minju Song , Soyon Park , Donghyeon Lee , Seungheun Baek , Jaewoo Kang

Large Language Models (LLMs) have demonstrated impressive capabilities in structured reasoning and symbolic tasks, with coding emerging as a particularly successful application. This progress has naturally motivated efforts to extend these…

人工智能 · 计算机科学 2026-02-02 Andrea Asperti , Alberto Naibo , Claudio Sacerdoti Coen

Structured reasoning over natural language inputs remains a core challenge in artificial intelligence, as it requires bridging the gap between unstructured linguistic expressions and formal logical representations. In this paper, we propose…

人工智能 · 计算机科学 2025-07-14 Keying Yang , Hao Wang , Kai Yang

Text-guided molecular design is a key capability for AI-driven drug discovery, yet it remains challenging to map sequential natural-language instructions with non-linear molecular structures under strict chemical constraints. Most existing…

人工智能 · 计算机科学 2026-04-23 Wengyu Zhang , Xiao-Yong Wei , Qing Li

Reasoning Language Models (RLMs) have gained traction for their ability to perform complex, multi-step reasoning tasks through mechanisms such as Chain-of-Thought (CoT) prompting or fine-tuned reasoning traces. While these capabilities…

计算与语言 · 计算机科学 2025-07-04 Riccardo Cantini , Nicola Gabriele , Alessio Orsino , Domenico Talia

Organic reaction mechanisms are the stepwise elementary reactions by which reactants form intermediates and products, and are fundamental to understanding chemical reactivity and designing new molecules and reactions. Although large…

人工智能 · 计算机科学 2026-05-05 Ruiling Xu , Yifan Zhang , Qingyun Wang , Carl Edwards , Heng Ji

Logical reasoning is a core capability for large language models (LLMs), yet existing benchmarks that rely solely on final-answer accuracy fail to capture the quality of the reasoning process. To address this, we introduce FineLogic, a…

Recent advances in large language models (LLMs) have shown remarkable progress, yet their capacity for logical ``slow-thinking'' reasoning persists as a critical research frontier. Current inference scaling paradigms suffer from two…

计算与语言 · 计算机科学 2025-03-21 Jinyi Liu , Yan Zheng , Rong Cheng , Qiyu Wu , Wei Guo , Fei Ni , Hebin Liang , Yifu Yuan , Hangyu Mao , Fuzheng Zhang , Jianye Hao

A molecule's properties are fundamentally determined by its composition and structure encoded in its molecular graph. Thus, reasoning about molecular properties requires the ability to parse and understand the molecular graph. Large…

Large Language Models are versatile, general-purpose tools with a wide range of applications. Recently, the advent of "reasoning models" has led to substantial improvements in their abilities in advanced problem-solving domains such as…

机器学习 · 计算机科学 2025-07-14 Nicholas T. Runcie , Charlotte M. Deane , Fergus Imrie

Large Language Models (LLMs) have succeeded remarkably in various natural language processing (NLP) tasks, yet their reasoning capabilities remain a fundamental challenge. While LLMs exhibit impressive fluency and factual recall, their…

计算与语言 · 计算机科学 2025-05-29 Avinash Patil , Aryan Jadon
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