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Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

计算与语言 · 计算机科学 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

Negative medical findings are prevalent in clinical reports, yet discriminating them from positive findings remains a challenging task for information extraction. Most of the existing systems treat this task as a pipeline of two separate…

计算与语言 · 计算机科学 2020-01-23 Parminder Bhatia , Busra Celikkaya , Mohammed Khalilia

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

计算与语言 · 计算机科学 2022-03-29 Urchade Zaratiana , Pierre Holat , Nadi Tomeh , Thierry Charnois

Named Entity Recognition (NER) is an important task in natural language processing that aims to identify and extract key entities from unstructured text. We present a novel application of NER in plasma physics research articles and address…

计算与语言 · 计算机科学 2026-02-13 Muhammad Haris , Hans Höft , Markus M. Becker , Markus Stocker

Motivation: Named Entity Recognition (NER) is a key task to support biomedical research. In Biomedical Named Entity Recognition (BioNER), obtaining high-quality expert annotated data is laborious and expensive, leading to the development of…

计算与语言 · 计算机科学 2023-05-23 Liangping Ding , Giovanni Colavizza , Zhixiong Zhang

Developing high-performance entity normalization algorithms that can alleviate the term variation problem is of great interest to the biomedical community. Although deep learning-based methods have been successfully applied to biomedical…

信息检索 · 计算机科学 2019-08-12 Zongcheng Ji , Qiang Wei , Hua Xu

Named entity recognition (NER) has been one of the essential preliminary steps in modern NLP applications. This report focuses on implementing the NER task on finetuning two pretrained models: (i) an encoder-only model (BERT) with a simple…

计算与语言 · 计算机科学 2026-05-19 Mei Jia

Named Entity Recognition (NER) serves as a foundational component in many natural language processing (NLP) pipelines. However, current NER models typically output a single predicted label sequence without any accompanying measure of…

计算与语言 · 计算机科学 2026-01-27 Matthew Singer , Srijan Sengupta , Karl Pazdernik

Named entity recognition (NER) stands as a fundamental and pivotal task within the realm of Natural Language Processing. Particularly within the domain of Biomedical Method NER, this task presents notable challenges, stemming from the…

计算与语言 · 计算机科学 2024-07-01 Chen Tang , Bohao Yang , Kun Zhao , Bo Lv , Chenghao Xiao , Frank Guerin , Chenghua Lin

This paper presents a framework for Named Entity Recognition (NER) leveraging the Bidirectional Encoder Representations from Transformers (BERT) model in natural language processing (NLP). NER is a fundamental task in NLP with broad…

计算与语言 · 计算机科学 2025-05-06 Mo Sun , Siheng Xiong , Yuankai Cai , Bowen Zuo

Biomedical named entity recognition (NER) is a critial task that aims to identify structured information in clinical text, which is often replete with complex, technical terms and a high degree of variability. Accurate and reliable NER can…

计算与语言 · 计算机科学 2023-05-30 Zhiyi Li , Shengjie Zhang , Yujie Song , Jungyeul Park

Noisy training data can significantly degrade the performance of language-model-based classifiers, particularly in non-topical classification tasks. In this study we designed a methodological framework to assess the impact of denoising.…

计算与语言 · 计算机科学 2026-03-10 Nouran Khallaf , Serge Sharoff

Named Entity Recognition (NER) is an important subtask of information extraction that seeks to locate and recognise named entities. Despite recent achievements, we still face limitations in correctly detecting and classifying entities,…

信息检索 · 计算机科学 2018-09-07 Diego Esteves

We conducted a human subject study of named entity recognition on a noisy corpus of conversational music recommendation queries, with many irregular and novel named entities. We evaluated the human NER linguistic behaviour in these…

计算与语言 · 计算机科学 2023-03-14 Elena V. Epure , Romain Hennequin

The CoNLL-03 corpus is arguably the most well-known and utilized benchmark dataset for named entity recognition (NER). However, prior works found significant numbers of annotation errors, incompleteness, and inconsistencies in the data.…

计算与语言 · 计算机科学 2023-10-26 Susanna Rücker , Alan Akbik

Named Entity Recognition (NER) encounters the challenge of unbalanced labels, where certain entity types are overrepresented while others are underrepresented in real-world datasets. This imbalance can lead to biased models that perform…

计算与语言 · 计算机科学 2024-09-06 Abdul Rehman , Jian Jun Zhang , Xiaosong Yang

Speech Entity Linking aims to recognize and disambiguate named entities in spoken languages. Conventional methods suffer gravely from the unfettered speech styles and the noisy transcripts generated by ASR systems. In this paper, we propose…

计算与语言 · 计算机科学 2022-09-30 Shen Huang , Yuchen Zhai , Xinwei Long , Yong Jiang , Xiaobin Wang , Yin Zhang , Pengjun Xie

The success of Deep Neural Network (DNN) models significantly depends on the quality of provided annotations. In medical image segmentation, for example, having multiple expert annotations for each data point is common to minimize…

计算机视觉与模式识别 · 计算机科学 2025-02-12 Asma Ahmed Hashmi , Aigerim Zhumabayeva , Nikita Kotelevskii , Artem Agafonov , Mohammad Yaqub , Maxim Panov , Martin Takáč

Popular solutions to Named Entity Recognition (NER) include conditional random fields, sequence-to-sequence models, or utilizing the question-answering framework. However, they are not suitable for nested and overlapping spans with large…

计算与语言 · 计算机科学 2022-03-08 Hagen Soltau , Izhak Shafran , Mingqiu Wang , Laurent El Shafey

This paper introduces an approach for building a Named Entity Recognition (NER) model built upon a Bidirectional Encoder Representations from Transformers (BERT) architecture, specifically utilizing the SlovakBERT model. This NER model…

计算与语言 · 计算机科学 2024-02-09 Bibiána Lajčinová , Patrik Valábek , Michal Spišiak
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