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Single-cell RNA sequencing (scRNA-seq) enables high-resolution analysis of cellular heterogeneity, but its complexity, which is marked by high dimensionality, sparsity, and batch effects, which poses major computational challenges.…

计算与语言 · 计算机科学 2026-03-25 Cong Qi , Hanzhang Fang , Siqi Jiang , Xun Song , Tianxing Hu , Wei Zhi

Session-based recommendation systems suggest relevant items to users by modeling user behavior and preferences using short-term anonymous sessions. Existing methods leverage Graph Neural Networks (GNNs) that propagate and aggregate…

信息检索 · 计算机科学 2022-01-10 Sai Mitheran , Abhinav Java , Surya Kant Sahu , Arshad Shaikh

We present Bi-Level Attention-Based Relational Graph Convolutional Networks (BR-GCN), unique neural network architectures that utilize masked self-attentional layers with relational graph convolutions, to effectively operate on highly…

机器学习 · 计算机科学 2024-04-16 Roshni G. Iyer , Wei Wang , Yizhou Sun

Many machine learning tasks such as multiple instance learning, 3D shape recognition, and few-shot image classification are defined on sets of instances. Since solutions to such problems do not depend on the order of elements of the set,…

机器学习 · 计算机科学 2019-05-28 Juho Lee , Yoonho Lee , Jungtaek Kim , Adam R. Kosiorek , Seungjin Choi , Yee Whye Teh

Vision transformers have achieved great successes in many computer vision tasks. Most methods generate vision tokens by splitting an image into a regular and fixed grid and treating each cell as a token. However, not all regions are equally…

计算机视觉与模式识别 · 计算机科学 2022-04-22 Wang Zeng , Sheng Jin , Wentao Liu , Chen Qian , Ping Luo , Wanli Ouyang , Xiaogang Wang

Graph Transformers (GTs) have significantly advanced the field of graph representation learning by overcoming the limitations of message-passing graph neural networks (GNNs) and demonstrating promising performance and expressive power.…

机器学习 · 计算机科学 2024-05-07 Wenhao Zhu , Guojie Song , Liang Wang , Shaoguo Liu

Single-cell RNA-sequencing (scRNA-seq) has become a routinely used technique to quantify the gene expression profile of thousands of single cells simultaneously. Analysis of scRNA-seq data plays an important role in the study of cell states…

基因组学 · 定量生物学 2022-10-13 Matthew Brendel , Chang Su , Zilong Bai , Hao Zhang , Olivier Elemento , Fei Wang

The recent development of multimodal single-cell technology has made the possibility of acquiring multiple omics data from individual cells, thereby enabling a deeper understanding of cellular states and dynamics. Nevertheless, the…

基因组学 · 定量生物学 2023-10-16 Wenzhuo Tang , Hongzhi Wen , Renming Liu , Jiayuan Ding , Wei Jin , Yuying Xie , Hui Liu , Jiliang Tang

Transformers have been extensively studied in medical image segmentation to build pairwise long-range dependence. Yet, relatively limited well-annotated medical image data makes transformers struggle to extract diverse global features,…

图像与视频处理 · 电气工程与系统科学 2023-09-13 Xian Lin , Zengqiang Yan , Xianbo Deng , Chuansheng Zheng , Li Yu

In representation learning on graph-structured data, many popular graph neural networks (GNNs) fail to capture long-range dependencies, leading to performance degradation. Furthermore, this weakness is magnified when the concerned graph is…

机器学习 · 计算机科学 2024-03-07 Mengying Jiang , Guizhong Liu , Yuanchao Su , Xinliang Wu

Deep learning models for brain tumor analysis require large and diverse datasets that are often siloed across healthcare institutions due to privacy regulations. We present a federated learning framework for brain tumor localization that…

计算机视觉与模式识别 · 计算机科学 2026-01-22 Andrea Protani , Riccardo Taiello , Marc Molina Van Den Bosch , Luigi Serio

Graph Transformers excel in long-range dependency modeling, but generally require quadratic memory complexity in the number of nodes in an input graph, and hence have trouble scaling to large graphs. Sparse attention variants such as…

机器学习 · 计算机科学 2024-11-26 Hamed Shirzad , Honghao Lin , Balaji Venkatachalam , Ameya Velingker , David Woodruff , Danica Sutherland

Background: Single-cell RNA sequencing (scRNA-seq) is a powerful profiling technique at the single-cell resolution. Appropriate analysis of scRNA-seq data can characterize molecular heterogeneity and shed light into the underlying cellular…

Face clustering is a useful tool for applications like automatic face annotation and retrieval. The main challenge is that it is difficult to cluster images from the same identity with different face poses, occlusions, and image quality.…

计算机视觉与模式识别 · 计算机科学 2021-04-26 Jinxing Ye , Xioajiang Peng , Baigui Sun , Kai Wang , Xiuyu Sun , Hao Li , Hanqing Wu

Pattern recognition based on RGB-Event data is a newly arising research topic and previous works usually learn their features using CNN or Transformer. As we know, CNN captures the local features well and the cascaded self-attention…

计算机视觉与模式识别 · 计算机科学 2025-04-21 Xiao Wang , Yao Rong , Shiao Wang , Yuan Chen , Zhe Wu , Bo Jiang , Yonghong Tian , Jin Tang

Message Passing Neural Networks have recently become the most popular approach to graph machine learning tasks; however, their receptive field is limited by the number of message passing layers. To increase the receptive field, Graph…

机器学习 · 计算机科学 2026-04-10 Oleg Platonov , Liudmila Prokhorenkova

The exploration of cellular heterogeneity within the tumor microenvironment (TME) via single-cell RNA sequencing (scRNA-seq) is essential for understanding cancer progression and response to therapy. Current scRNA-seq approaches, however,…

基因组学 · 定量生物学 2025-02-06 Yu-An Huang , Yue-Chao Li , Hai-Ru You , Jie Pan , Xiyue Cao , Xinyuan Li , Zhi-An Huang , Zhu-Hong You

Chord recognition is an important task since chords are highly abstract and descriptive features of music. For effective chord recognition, it is essential to utilize relevant context in audio sequence. While various machine learning models…

声音 · 计算机科学 2019-07-08 Jonggwon Park , Kyoyun Choi , Sungwook Jeon , Dokyun Kim , Jonghun Park

Transformers are widely used in computer vision areas and have achieved remarkable success. Most state-of-the-art approaches split images into regular grids and represent each grid region with a vision token. However, fixed token…

计算机视觉与模式识别 · 计算机科学 2024-07-17 Wang Zeng , Sheng Jin , Lumin Xu , Wentao Liu , Chen Qian , Wanli Ouyang , Ping Luo , Xiaogang Wang

Single-cell RNA sequencing (scRNA-seq) is widely used to reveal heterogeneity in cells, which has given us insights into cell-cell communication, cell differentiation, and differential gene expression. However, analyzing scRNA-seq data is a…

机器学习 · 计算机科学 2023-06-27 Yuta Hozumi , Gu-Wei Wei