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Large language models (LLMs) are catalyzing the development of autonomous AI research agents for scientific and engineering discovery. We present FM Agent, a novel and general-purpose multi-agent framework that leverages a synergistic…

Topology optimization can generate efficient structures, but designers often must manually translate qualitative intent, such as desired visual style, product experience, or manufacturability into solver settings that are not directly tied…

人工智能 · 计算机科学 2026-05-22 Isabella A. Stewart , Hongrui Chen , Faez Ahmed

Generative AI is reshaping offensive cybersecurity by enabling autonomous red team agents that can plan, execute, and adapt during penetration tests. However, existing approaches face trade-offs between generality and specialization, and…

密码学与安全 · 计算机科学 2025-11-25 Strahinja Janjusevic , Anna Baron Garcia , Sohrob Kazerounian

We introduce AceFF, a pre-trained machine learning interatomic potential (MLIP) optimized for small molecule drug discovery. While MLIPs have emerged as efficient alternatives to Density Functional Theory (DFT), generalizability across…

Materials science workflows rely on structured and unstructured data from the vast body of available scientific literature. However, most of the experimental details remain buried in text, tables, graphs and figures. Thus, constructing…

计算与语言 · 计算机科学 2026-05-07 Achuth Chandrasekhar , Omid Barati Farimani , Radheesh Sharma Meda , Amir Barati Farimani

Large language models (LLMs) have enabled a new class of agentic AI systems that reason, plan, and act by invoking external tools. However, most existing agentic architectures remain centralized and monolithic, limiting scalability,…

计算机科学与博弈论 · 计算机科学 2026-02-04 Ya-Ting Yang , Quanyan Zhu

Prefix adders are fundamental arithmetic circuits, but their design space grows exponentially with bit-width, posing significant optimization challenges. Previous works face limitations in performance, generalization, and scalability. To…

硬件体系结构 · 计算机科学 2025-07-09 Dongsheng Zuo , Jiadong Zhu , Yang Luo , Yuzhe Ma

Efficient design and discovery of target-driven molecules is a critical step in facilitating lead optimization in drug discovery. Current approaches to develop molecules for a target protein are intuition-driven, hampered by slow iterative…

机器学习 · 计算机科学 2022-05-24 Andrew D. McNaughton , Mridula S. Bontha , Carter R. Knutson , Jenna A. Pope , Neeraj Kumar

In an era where vast amounts of data are collected and processed from diverse sources, there is a growing demand for sophisticated AI systems capable of intelligently fusing and analyzing this information. To address these challenges,…

软件工程 · 计算机科学 2025-11-24 Amine Ben Hassouna , Hana Chaari , Ines Belhaj

Proteins are dynamic molecular machines whose biological functions, spanning enzymatic catalysis, signal transduction, and structural adaptation, are intrinsically linked to their motions. Designing proteins with targeted dynamic…

生物大分子 · 定量生物学 2025-02-17 Bo Ni , Markus J. Buehler

While Large Language Models (LLMs) have achieved remarkable performance, they remain vulnerable to jailbreak. The integration of Large Language Models (LLMs) with external tools via protocols such as the Model Context Protocol (MCP)…

密码学与安全 · 计算机科学 2026-01-09 Wenpeng Xing , Zhonghao Qi , Yupeng Qin , Yilin Li , Caini Chang , Jiahui Yu , Changting Lin , Zhenzhen Xie , Meng Han

Large Language Models (LLMs) can generate Computer-Aided Design (CAD), yet lack physical comprehension required for reliable engineering design. Instead of attempting to implicitly learn physical laws from data, we propose a Hybrid…

计算机视觉与模式识别 · 计算机科学 2026-05-20 Elias Berger , Muhammad Usama , Jan Mehlstäubl , Bernhard Saske , Kristin Paetzold-Byhain

Powerful autonomous systems, which reason, plan, and converse using and between numerous tools and agents, are made possible by Large Language Models (LLMs), Vision-Language Models (VLMs), and new agentic AI systems, like LangChain and…

密码学与安全 · 计算机科学 2025-12-30 Toqeer Ali Syed , Mishal Ateeq Almutairi , Mahmoud Abdel Moaty

Prediction of protein-ligand interactions (PLI) plays a crucial role in drug discovery as it guides the identification and optimization of molecules that effectively bind to target proteins. Despite remarkable advances in deep…

生物大分子 · 定量生物学 2023-07-18 Seokhyun Moon , Sang-Yeon Hwang , Jaechang Lim , Woo Youn Kim

Multi-agent LLM frameworks are widely used to accelerate the development of agent systems powered by large language models (LLMs). These frameworks impose distinct architectural structures that govern how agents interact, store information,…

人工智能 · 计算机科学 2026-02-04 Abdelghny Orogat , Ana Rostam , Essam Mansour

Fragment-based drug design is a promising strategy leveraging the binding of small chemical moieties that can efficiently guide drug discovery. The initial step of fragment identification remains challenging, as fragments often bind weakly…

The emergence of Large Language Models (LLMs) has ushered in a transformative paradigm in artificial intelligence, Agentic AI, where intelligent agents exhibit goal-directed autonomy, contextual reasoning, and dynamic multi-agent…

人工智能 · 计算机科学 2025-08-15 Hana Derouiche , Zaki Brahmi , Haithem Mazeni

AI agentic programming is an emerging paradigm where large language model (LLM)-based coding agents autonomously plan, execute, and interact with tools such as compilers, debuggers, and version control systems. Unlike conventional code…

软件工程 · 计算机科学 2025-09-16 Huanting Wang , Jingzhi Gong , Huawei Zhang , Jie Xu , Zheng Wang

In recent years, deep learning techniques have made significant strides in molecular generation for specific targets, driving advancements in drug discovery. However, existing molecular generation methods present significant limitations:…

机器学习 · 计算机科学 2025-03-12 Taojie Kuang , Qianli Ma , Athanasios V. Vasilakos , Yu Wang , Qiang , Cheng , Zhixiang Ren

After AlphaFold won the Nobel Prize, protein prediction with deep learning once again became a hot topic. We comprehensively explore advanced deep learning methods applied to protein structure prediction and design. It begins by examining…

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