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Machine Learning Force Fields (MLFFs) are a promising alternative to expensive ab initio quantum mechanical molecular simulations. Given the diversity of chemical spaces that are of interest and the cost of generating new data, it is…

机器学习 · 计算机科学 2025-05-30 Tobias Kreiman , Aditi S. Krishnapriyan

Deep energy-based models (EBMs) are very flexible in distribution parametrization but computationally challenging because of the intractable partition function. They are typically trained via maximum likelihood, using contrastive divergence…

机器学习 · 计算机科学 2020-07-22 Lantao Yu , Yang Song , Jiaming Song , Stefano Ermon

Transport and the approach to equilibrium in interacting classical and quantum systems is a challenging problem of both theoretical and experimental interest. One useful organizing principle characterizing equilibration is the dissipative…

统计力学 · 物理学 2024-08-27 Alexios A. Michailidis , Dmitry A. Abanin , Luca V. Delacrétaz

Deep energy-based models are powerful, but pose challenges for learning and inference (Belanger and McCallum, 2016). Tu and Gimpel (2018) developed an efficient framework for energy-based models by training "inference networks" to…

计算与语言 · 计算机科学 2020-10-13 Lifu Tu , Richard Yuanzhe Pang , Kevin Gimpel

Electronic structure is ubiquitously obtained via density functional theory (DFT), where the charge density plays a central role. This work presents EdenGNN (Equivariant Density Graph Neural Network), a machine learning (ML) charge density…

材料科学 · 物理学 2026-03-16 Xiwen Li , Zaizhou Xin , Hongyu Yu , Yang Zhong , Xingao Gong , Hongjun Xiang

Generative modelling paradigms based on denoising diffusion processes have emerged as a leading candidate for conditional sampling in inverse problems. In many real-world applications, we often have access to large, expensively trained…

Recent 3D molecular generation methods primarily use asynchronous auto-regressive or synchronous diffusion models. While auto-regressive models build molecules sequentially, they're limited by a short horizon and a discrepancy between…

机器学习 · 计算机科学 2026-04-27 Junyi An , Chao Qu , Yun-Fei Shi , Zhijian Zhou , Fenglei Cao , Yuan Qi

Generative modeling has recently undergone remarkable advancements, primarily propelled by the transformative implications of Diffusion Probabilistic Models (DPMs). The impressive capability of these models, however, often entails…

机器学习 · 计算机科学 2023-10-03 Gongfan Fang , Xinyin Ma , Xinchao Wang

Exemplar-free Class Incremental Learning (EFCIL) aims to learn from a sequence of tasks without having access to previous task data. In this paper, we consider the challenging Cold Start scenario in which insufficient data is available in…

计算机视觉与模式识别 · 计算机科学 2025-10-06 Simone Magistri , Tomaso Trinci , Albin Soutif-Cormerais , Joost van de Weijer , Andrew D. Bagdanov

Protein structure prediction has reached revolutionary levels of accuracy on single structures, yet distributional modeling paradigms are needed to capture the conformational ensembles and flexibility that underlie biological function.…

生物大分子 · 定量生物学 2023-04-06 Bowen Jing , Ezra Erives , Peter Pao-Huang , Gabriele Corso , Bonnie Berger , Tommi Jaakkola

Diffusion generative models have emerged as a powerful framework for addressing problems in structural biology and structure-based drug design. These models operate directly on 3D molecular structures. Due to the unfavorable scaling of…

生物大分子 · 定量生物学 2024-05-10 Ian Dunn , David Ryan Koes

Molecular structure generation is a fundamental problem that involves determining the 3D positions of molecules' constituents. It has crucial biological applications, such as molecular docking, protein folding, and molecular design. Recent…

Electroencephalography (EEG)-based visual perception reconstruction has become an important area of research. Neuroscientific studies indicate that humans can decode imagined 3D objects by perceiving or imagining various visual information,…

计算机视觉与模式识别 · 计算机科学 2024-11-19 Xin Xiang , Wenhui Zhou , Guojun Dai

Ultrafast diffraction imaging is a powerful tool to retrieve the geometric structure of gas-phase molecules with combined picometre spatial and attosecond temporal resolution. However, structural retrieval becomes progressively difficult…

化学物理 · 物理学 2021-10-13 Xinyao Liu , Kasra Amini , Aurelien Sanchez , Blanca Belsa , Tobias Steinle , Jens Biegert

Structure optimization, which yields the relaxed structure (minimum-energy state), is essential for reliable materials property calculations, yet traditional ab initio approaches such as density-functional theory (DFT) are computationally…

材料科学 · 物理学 2025-11-18 Ziduo Yang , Yi-Ming Zhao , Xian Wang , Wei Zhuo , Xiaoqing Liu , Lei Shen

Machine-learning (ML) force fields enable large-scale simulations with near-first-principles accuracy at substantially reduced computational cost. Recent work has extended ML force-field approaches to adiabatic dynamical simulations of…

强关联电子 · 物理学 2026-01-08 Yunhao Fan , Gia-Wei Chern

Diffusion models (DMs) excel in image generation but suffer from slow inference and training-inference discrepancies. Although gradient-based solvers for DMs accelerate denoising inference, they often lack theoretical foundations in…

计算机视觉与模式识别 · 计算机科学 2026-02-04 Shigui Li , Wei Chen , Delu Zeng

Acquiring high-quality data for training discriminative models is a crucial yet challenging aspect of building effective predictive systems. In this paper, we present Diffusion Inversion, a simple yet effective method that leverages the…

计算机视觉与模式识别 · 计算机科学 2023-05-25 Yongchao Zhou , Hshmat Sahak , Jimmy Ba

Modeling the time-dependent evolution of electron density is essential for understanding quantum mechanical behaviors of condensed matter and enabling predictive simulations in spectroscopy, photochemistry, and ultrafast science. Yet, while…

计算物理 · 物理学 2025-09-03 Yuan Chiang , Youngsoo Choi , Daniel Osei-Kuffuor

A central problem in machine learning involves modeling complex data-sets using highly flexible families of probability distributions in which learning, sampling, inference, and evaluation are still analytically or computationally…

机器学习 · 计算机科学 2015-11-20 Jascha Sohl-Dickstein , Eric A. Weiss , Niru Maheswaranathan , Surya Ganguli