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This research on data extraction methods applies recent advances in natural language processing to evidence synthesis based on medical texts. Texts of interest include abstracts of clinical trials in English and in multilingual contexts.…

计算与语言 · 计算机科学 2020-01-31 Lena Schmidt , Julie Weeds , Julian P. T. Higgins

Removing Personally Identifiable Information (PII) from clinical notes in Electronic Health Records (EHRs) is essential for research and AI development. While Large Language Models (LLMs) are powerful, their high computational costs and the…

计算与语言 · 计算机科学 2025-10-23 Prakrithi Shivaprakash , Lekhansh Shukla , Animesh Mukherjee , Prabhat Chand , Pratima Murthy

Large-scale clinical data is invaluable to driving many computational scientific advances today. However, understandable concerns regarding patient privacy hinder the open dissemination of such data and give rise to suboptimal siloed…

计算与语言 · 计算机科学 2019-05-23 Oren Melamud , Chaitanya Shivade

Of the 2652 articles considered, 106 met the inclusion criteria. Review of the included papers resulted in identification of 43 chronic diseases, which were then further classified into 10 disease categories using ICD-10. The majority of…

计算机与社会 · 计算机科学 2019-08-19 Seyedmostafa Sheikhalishahi , Riccardo Miotto , Joel T Dudley , Alberto Lavelli , Fabio Rinaldi , Venet Osmani

Clinical notes contain rich clinical narratives but their unstructured format poses challenges for large-scale analysis. Standardized terminologies such as SNOMED CT improve interoperability, yet understanding how concepts relate through…

计算与语言 · 计算机科学 2025-09-05 Ali Noori , Somya Mohanty , Prashanti Manda

Many practical applications of AI in medicine consist of semi-supervised discovery: The investigator aims to identify features of interest at a resolution more fine-grained than that of the available human labels. This is often the scenario…

计算与语言 · 计算机科学 2020-04-08 Allen Schmaltz , Andrew Beam

Health literacy is a critical determinant of patient outcomes, yet current screening tools are not always feasible and differ considerably in the number of items, question format, and dimensions of health literacy they capture, making…

Unsupervised pretraining is an integral part of many natural language processing systems, and transfer learning with language models has achieved remarkable results in many downstream tasks. In the clinical application of medical code…

计算与语言 · 计算机科学 2022-06-03 Shaoxiong Ji , Matti Hölttä , Pekka Marttinen

Large Language Models (LLMs) have demonstrated remarkable proficiency in automated text annotation within natural language processing. However, their deployment in clinical settings is severely constrained by strict privacy regulations and…

Sample size calculation is an essential step in most data-based disciplines. Large enough samples ensure representativeness of the population and determine the precision of estimates. This is true for most quantitative studies, including…

Medical image segmentation is a fundamental and critical step in many image-guided clinical approaches. Recent success of deep learning-based segmentation methods usually relies on a large amount of labeled data, which is particularly…

计算机视觉与模式识别 · 计算机科学 2023-11-15 Rushi Jiao , Yichi Zhang , Le Ding , Rong Cai , Jicong Zhang

This study investigates the use of unsupervised word embeddings and sequence features for sample representation in an active learning framework built to extract clinical concepts from clinical free text. The objective is to further reduce…

计算与语言 · 计算机科学 2016-11-16 Mahnoosh Kholghi , Lance De Vine , Laurianne Sitbon , Guido Zuccon , Anthony Nguyen

The extraction of relevant data from Electronic Health Records (EHRs) is crucial to identifying symptoms and automating epidemiological surveillance processes. By harnessing the vast amount of unstructured text in EHRs, we can detect…

计算与语言 · 计算机科学 2025-02-10 Juliano Genari , Guilherme Tegoni Goedert

Following each patient visit, physicians draft long semi-structured clinical summaries called SOAP notes. While invaluable to clinicians and researchers, creating digital SOAP notes is burdensome, contributing to physician burnout. In this…

计算与语言 · 计算机科学 2021-06-03 Kundan Krishna , Sopan Khosla , Jeffrey P. Bigham , Zachary C. Lipton

We introduce SoftTiger, a clinical large language model (CLaM) designed as a foundation model for healthcare workflows. The narrative and unstructured nature of clinical notes is a major obstacle for healthcare intelligentization. We…

计算与语言 · 计算机科学 2024-08-21 Ye Chen , Igor Couto , Wei Cai , Cong Fu , Bruno Dorneles

Demographics, Social determinants of health, and family history documented in the unstructured text within the electronic health records are increasingly being studied to understand how this information can be utilized with the structured…

计算与语言 · 计算机科学 2023-09-15 Neel Bhate , Ansh Mittal , Zhe He , Xiao Luo

BACKGROUND: Radiology reports are typically written in a free-text format, making clinical information difficult to extract and use. Recently the adoption of structured reporting (SR) has been recommended by various medical societies thanks…

Electronic health records (EHRs) store an extensive array of patient information, encompassing medical histories, diagnoses, treatments, and test outcomes. These records are crucial for enabling healthcare providers to make well-informed…

计算与语言 · 计算机科学 2023-08-07 Yu-Neng Chuang , Ruixiang Tang , Xiaoqian Jiang , Xia Hu

Recent studies on automatic note generation have shown that doctors can save significant amounts of time when using automatic clinical note generation (Knoll et al., 2022). Summarization models have been used for this task to generate…

计算与语言 · 计算机科学 2023-05-30 Asma Ben Abacha , Wen-wai Yim , George Michalopoulos , Thomas Lin

There is an increasing interest in developing artificial intelligence (AI) systems to process and interpret electronic health records (EHRs). Natural language processing (NLP) powered by pretrained language models is the key technology for…