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Retrosynthesis prediction aims to infer the reactant molecule based on a given product molecule, which is a fundamental task in chemical synthesis. However, existing models rely on static pattern-matching paradigm, which limits their…

机器学习 · 计算机科学 2025-12-08 Xinyi Li , Sai Wang , Yutian Lin , Yu Wu , Yi Yang

The emergence of synthetic data represents a pivotal shift in modern machine learning, offering a solution to satisfy the need for large volumes of data in domains where real data is scarce, highly private, or difficult to obtain. We…

计算与语言 · 计算机科学 2024-08-19 Krisztian Balog , John Palowitch , Barbara Ikica , Filip Radlinski , Hamidreza Alvari , Mehdi Manshadi

Despite recent advances in training and prompting strategies for Large Language Models (LLMs), these models continue to face challenges with complex logical reasoning tasks that involve long reasoning chains. In this work, we explore the…

计算与语言 · 计算机科学 2024-12-18 Jiaming Zhou , Abbas Ghaddar , Ge Zhang , Liheng Ma , Yaochen Hu , Soumyasundar Pal , Mark Coates , Bin Wang , Yingxue Zhang , Jianye Hao

Joint logical-numerical reasoning remains a major challenge for language models, yet existing datasets rely on fixed rule sets and offer limited control over task complexity, constraining their generalizability for evaluation and training.…

计算与语言 · 计算机科学 2025-10-14 Yiwei Liu , Yucheng Li , Xiao Li , Gong Cheng

Large language models (LLMs) are increasingly applied to scientific research, yet existing evaluations often fail to reflect the fine-grained capabilities required in practice. Most benchmarks are manually curated or domain-generic,…

Automated computational analysis of the vast chemical space is critical for numerous fields of research such as drug discovery and material science. Representation learning techniques have recently been employed with the primary objective…

定量方法 · 定量生物学 2023-05-26 Atakan Yüksel , Erva Ulusoy , Atabey Ünlü , Tunca Doğan

Automated Synthesis Planning has recently re-emerged as a research area at the intersection of chemistry and machine learning. Despite the appearance of steady progress, we argue that imperfect benchmarks and inconsistent comparisons mask…

Large Language Models (LLMs) show promise for automated code repair but often struggle with the complex semantic and structural correctness required. We present SynthFix, a hybrid neural-symbolic framework that improves LLM-based…

软件工程 · 计算机科学 2026-04-21 Yifan Zhang , Jieyu Li , Kexin Pei , Yu Huang , Kevin Leach

The prediction of chemical synthesis pathways plays a pivotal role in materials science research. Challenges, such as the complexity of synthesis pathways and the lack of comprehensive datasets, currently hinder our ability to predict these…

材料科学 · 物理学 2023-11-03 Ziyi Chen , Fankai Xie , Meng Wan , Yang Yuan , Miao Liu , Zongguo Wang , Sheng Meng , Yangang Wang

Retrosynthesis prediction is a fundamental problem in organic synthesis, where the task is to identify precursor molecules that can be used to synthesize a target molecule. A key consideration in building neural models for this task is…

机器学习 · 计算机科学 2021-06-07 Vignesh Ram Somnath , Charlotte Bunne , Connor W. Coley , Andreas Krause , Regina Barzilay

Linearized string representations serve as the foundation of scalable autoregressive molecular generation; however, they introduce a fundamental modality mismatch where a single molecular graph maps to multiple distinct sequences. This…

机器学习 · 计算机科学 2026-03-27 Xinyu Wang , Fei Dou , Jinbo Bi , Minghu Song

Molecule generation requires satisfying multiple chemical and biological constraints while searching a large and structured chemical space. This makes it a non-binary problem, where effective models must identify non-obvious solutions under…

计算与语言 · 计算机科学 2026-04-21 Wen Tao , Yiwei Wang , Peng Zhou , Bryan Hooi , Wanlong Fang , Tianle Zhang , Xiao Luo , Yuansheng Liu , Alvin Chan

The creation of high-quality human-labeled image-caption datasets presents a significant bottleneck in the development of Visual-Language Models (VLMs). In this work, we investigate an approach that leverages the strengths of Large Language…

计算机视觉与模式识别 · 计算机科学 2024-06-10 Sahand Sharifzadeh , Christos Kaplanis , Shreya Pathak , Dharshan Kumaran , Anastasija Ilic , Jovana Mitrovic , Charles Blundell , Andrea Banino

We introduce WavCraft, a collective system that leverages large language models (LLMs) to connect diverse task-specific models for audio content creation and editing. Specifically, WavCraft describes the content of raw audio materials in…

音频与语音处理 · 电气工程与系统科学 2024-05-13 Jinhua Liang , Huan Zhang , Haohe Liu , Yin Cao , Qiuqiang Kong , Xubo Liu , Wenwu Wang , Mark D. Plumbley , Huy Phan , Emmanouil Benetos

This methods article presents a reproducible calibration workflow for prompt-based large language models (LLMs) in structured evidence-synthesis tasks. The method separates the rules that define the scientific task from the mutable prompt…

机器学习 · 计算机科学 2026-05-11 Teo Susnjak

Large language models (LLMs) often suffer from hallucination, generating factually incorrect statements when handling questions beyond their knowledge and perception. Retrieval-augmented generation (RAG) addresses this by retrieving…

计算与语言 · 计算机科学 2025-11-18 Shengyuan Chen , Chuang Zhou , Zheng Yuan , Qinggang Zhang , Zeyang Cui , Hao Chen , Yilin Xiao , Jiannong Cao , Xiao Huang

Integrating Large Language Models (LLMs) into complex software systems enables the generation of human-understandable explanations of opaque AI processes, such as automated task planning. However, the quality and reliability of these…

人工智能 · 计算机科学 2026-04-24 Gricel Vázquez , Alexandros Evangelidis , Sepeedeh Shahbeigi , Radu Calinescu , Simos Gerasimou

Scientific Large Language Models (Sci-LLMs) have emerged as a promising frontier for accelerating biological discovery. However, these models face a fundamental challenge when processing raw biomolecular sequences: the tokenization dilemma.…

Designing therapeutic peptides with tailored properties is hindered by the vastness of sequence space, limited experimental data, and poor interpretability of current generative models. To address these challenges, we introduce PepThink-R1,…

机器学习 · 计算机科学 2026-03-30 Ruheng Wang , Hang Zhang , Trieu Nguyen , Shasha Feng , Hao-Wei Pang , Xiang Yu , Li Xiao , Peter Zhiping Zhang

Programming-by-example (PBE) is a synthesis paradigm that allows users to generate functions by simply providing input-output examples. While a promising interaction paradigm, synthesis is still too slow for realtime interaction and more…

机器学习 · 计算机科学 2020-02-10 Kairo Morton , William Hallahan , Elven Shum , Ruzica Piskac , Mark Santolucito