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Recent studies have underscored the capabilities of natural imaging foundation models to serve as powerful feature extractors, even in a zero-shot setting for medical imaging data. Most commonly, a shallow multi-layer perceptron (MLP) is…

计算机视觉与模式识别 · 计算机科学 2024-07-25 Johannes Kiechle , Daniel M. Lang , Stefan M. Fischer , Lina Felsner , Jan C. Peeken , Julia A. Schnabel

Graph Convolutional Networks (GCNs) achieve an impressive performance due to the remarkable representation ability in learning the graph information. However, GCNs, when implemented on a deep network, require expensive computation power,…

机器学习 · 计算机科学 2022-08-03 Zulun Zhu , Jiaying Peng , Jintang Li , Liang Chen , Qi Yu , Siqiang Luo

Developing models that can learn to reason is a notoriously challenging problem. We focus on reasoning in relational domains, where the use of Graph Neural Networks (GNNs) seems like a natural choice. However, previous work has shown that…

人工智能 · 计算机科学 2025-03-03 Irtaza Khalid , Steven Schockaert

We propose the Intuitive Reasoning Network (IRENE) - a novel neural model for intuitive psychological reasoning about agents' goals, preferences, and actions that can generalise previous experiences to new situations. IRENE combines a graph…

人工智能 · 计算机科学 2023-12-13 Matteo Bortoletto , Lei Shi , Andreas Bulling

One challenge of physics is to explain how collective properties arise from microscopic interactions. Indeed, interactions form the building blocks of almost all physical theories and are described by polynomial terms in the action. The…

无序系统与神经网络 · 物理学 2023-05-03 Claudia Merger , Alexandre René , Kirsten Fischer , Peter Bouss , Sandra Nestler , David Dahmen , Carsten Honerkamp , Moritz Helias

End-to-end training with global optimization have popularized graph neural networks (GNNs) for node classification, yet inadvertently introduced vulnerabilities to adversarial edge-perturbing attacks. Adversaries can exploit the inherent…

机器学习 · 计算机科学 2024-12-12 Ao Liu , Wenshan Li , Tao Li , Beibei Li , Guangquan Xu , Pan Zhou , Wengang Ma , Hanyuan Huang

At the intersection of computation and cognitive science, graph theory is utilized as a formalized description of complex relationships and structures. Traditional graph models are often static, lacking dynamic and autonomous behavioral…

神经元与认知 · 定量生物学 2024-06-11 Hui Wei , Chenyue Feng , Jianning Zhang

Graph neural networks (GNN) have shown outstanding applications in many fields where data is fundamentally represented as graphs (e.g., chemistry, biology, recommendation systems). In this vein, communication networks comprise many…

Graph neural networks (GNNs) are increasingly used to model biological systems, yet the reliability of post-hoc explanation methods for recovering meaningful molecular mechanisms remains unclear. Here, we systematically evaluate four widely…

分子网络 · 定量生物学 2026-05-22 Kyle Higgins , Ivan Laponogov , Dennis Veselkov , Kirill Veselkov

Dendrites are crucial structures for computation of an individual neuron. It has been shown that the dynamics of a biological neuron with dendrites can be approximated by artificial neural networks (ANN) with deep structure. However, it…

神经元与认知 · 定量生物学 2023-05-23 Jingyang Ma , Songting Li , Douglas Zhou

We introduce Attention Graphs, a new tool for mechanistic interpretability of Graph Neural Networks (GNNs) and Graph Transformers based on the mathematical equivalence between message passing in GNNs and the self-attention mechanism in…

机器学习 · 计算机科学 2025-02-26 Batu El , Deepro Choudhury , Pietro Liò , Chaitanya K. Joshi

Modern neuroimaging techniques, such as diffusion tensor imaging (DTI) and functional magnetic resonance imaging (fMRI), enable us to model the human brain as a brain network or connectome. Capturing brain networks' structural information…

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

神经元与认知 · 定量生物学 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

Thanks to their ease of implementation, multilayer perceptrons (MLPs) have become ubiquitous in deep learning applications. The graph underlying an MLP is indeed multipartite, i.e. each layer of neurons only connects to neurons belonging to…

神经与进化计算 · 计算机科学 2023-10-24 Tommaso Boccato , Matteo Ferrante , Andrea Duggento , Nicola Toschi

Dynamic Graph Neural Networks (DGNNs) have gained widespread attention due to their applicability in diverse domains such as traffic network prediction, epidemiological forecasting, and social network analysis. In this paper, we present…

机器学习 · 计算机科学 2025-01-28 Mingyu Guan , Saumia Singhal , Taesoo Kim , Anand Padmanabha Iyer

Despite significant advances in the field of deep learning in ap-plications to various areas, an explanation of the learning pro-cess of neural network models remains an important open ques-tion. The purpose of this paper is a comprehensive…

机器学习 · 计算机科学 2023-06-07 German Magai

Graphons are general and powerful models for generating graphs of varying size. In this paper, we propose to directly model graphons using neural networks, obtaining Implicit Graphon Neural Representation (IGNR). Existing work in modeling…

机器学习 · 计算机科学 2023-04-03 Xinyue Xia , Gal Mishne , Yusu Wang

Unsupervised graph representation learning aims to learn low-dimensional node embeddings without supervision while preserving graph topological structures and node attributive features. Previous graph neural networks (GNN) require a large…

机器学习 · 计算机科学 2020-09-04 Yanqiao Zhu , Yichen Xu , Feng Yu , Shu Wu , Liang Wang

Invertible neural networks (INNs) are neural network architectures with invertibility by design. Thanks to their invertibility and the tractability of Jacobian, INNs have various machine learning applications such as probabilistic modeling,…

机器学习 · 计算机科学 2022-04-18 Isao Ishikawa , Takeshi Teshima , Koichi Tojo , Kenta Oono , Masahiro Ikeda , Masashi Sugiyama

Single neurons in neural networks are often interpretable in that they represent individual, intuitively meaningful features. However, many neurons exhibit $\textit{mixed selectivity}$, i.e., they represent multiple unrelated features. A…

机器学习 · 统计学 2023-10-19 David Klindt , Sophia Sanborn , Francisco Acosta , Frédéric Poitevin , Nina Miolane
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