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The edit distance $ed(X,Y)$ of two strings $X,Y\in \Sigma^*$ is the minimum number of character edits (insertions, deletions, and substitutions) needed to transform $X$ into $Y$. Its weighted counterpart $ed^w(X,Y)$ minimizes the total cost…

数据结构与算法 · 计算机科学 2025-07-04 Itai Boneh , Egor Gorbachev , Tomasz Kociumaka

Given two strings of length $n$ over alphabet $\Sigma$, and an upper bound $k$ on their edit distance, the algorithm of Myers (Algorithmica'86) and Landau and Vishkin (JCSS'88) computes the unweighted string edit distance in…

数据结构与算法 · 计算机科学 2023-02-09 Debarati Das , Jacob Gilbert , MohammadTaghi Hajiaghayi , Tomasz Kociumaka , Barna Saha

We present the first dynamic algorithms for Dyck and tree edit distances with subpolynomial update times. Dyck edit distance measures how far a parenthesis string is from a well-parenthesized expression, while tree edit distance quantifies…

数据结构与算法 · 计算机科学 2025-10-21 Debarati Das , Jacob Gilbert , MohammadTaghi Hajiaghayi , Tomasz Kociumaka , Barna Saha

The edit distance is a fundamental measure of sequence similarity, defined as the minimum number of character insertions, deletions, and substitutions needed to transform one string into the other. Given two strings of length at most $n$,…

数据结构与算法 · 计算机科学 2023-07-17 Tomasz Kociumaka , Anish Mukherjee , Barna Saha

The edit distance between two rooted ordered trees with $n$ nodes labeled from an alphabet~$\Sigma$ is the minimum cost of transforming one tree into the other by a sequence of elementary operations consisting of deleting and relabeling…

数据结构与算法 · 计算机科学 2017-03-28 Karl Bringmann , Paweł Gawrychowski , Shay Mozes , Oren Weimann

The edit distance of two strings is the minimum number of insertions, deletions, and substitutions needed to transform one string into the other. The textbook algorithm determines the edit distance of length-$n$ strings in $O(n^2)$ time,…

数据结构与算法 · 计算机科学 2025-02-04 Egor Gorbachev , Tomasz Kociumaka

The edit distance of two strings is the minimum number of insertions, deletions, and substitutions of characters needed to transform one string into the other. The textbook dynamic-programming algorithm computes the edit distance of two…

数据结构与算法 · 计算机科学 2023-10-25 Alejandro Cassis , Tomasz Kociumaka , Philip Wellnitz

The tree edit distance is a natural dissimilarity measure between rooted ordered trees whose nodes are labeled over an alphabet $\Sigma$. It is defined as the minimum number of node edits (insertions, deletions, and relabelings) required to…

数据结构与算法 · 计算机科学 2025-07-04 Tomasz Kociumaka , Ali Shahali

Tree edit distance is a well-studied measure of dissimilarity between rooted trees with node labels. It can be computed in $O(n^3)$ time [Demaine, Mozes, Rossman, and Weimann, ICALP 2007], and fine-grained hardness results suggest that the…

数据结构与算法 · 计算机科学 2021-06-11 Shyan Akmal , Ce Jin

Computing the edit distance of two strings is one of the most basic problems in computer science and combinatorial optimization. Tree edit distance is a natural generalization of edit distance in which the task is to compute a measure of…

数据结构与算法 · 计算机科学 2022-09-16 Debarati Das , Jacob Gilbert , MohammadTaghi Hajiaghayi , Tomasz Kociumaka , Barna Saha , Hamed Saleh

The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming solution for this problem computes the edit-distance between…

数据结构与算法 · 计算机科学 2016-10-05 Danny Hermelin , Gad M. Landau , Shir Landau , Oren Weimann

The dynamic time warping (DTW) is a widely-used method that allows us to efficiently compare two time series that can vary in speed. Given two strings $A$ and $B$ of respective lengths $m$ and $n$, there is a fundamental dynamic programming…

数据结构与算法 · 计算机科学 2020-07-30 Akihiro Nishi , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

We give the first non-trivial fully dynamic probabilistic tree embedding algorithm for weighted graphs undergoing edge insertions and deletions. We obtain a trade-off between amortized update time and expected stretch against an oblivious…

数据结构与算法 · 计算机科学 2020-04-24 Sebastian Forster , Gramoz Goranci , Monika Henzinger

The Dyck language, which consists of well-balanced sequences of parentheses, is one of the most fundamental context-free languages. The Dyck edit distance quantifies the number of edits (character insertions, deletions, and substitutions)…

数据结构与算法 · 计算机科学 2021-12-14 Debarati Das , Tomasz Kociumaka , Barna Saha

The tree edit distance (TED) between two rooted ordered trees with $n$ nodes labeled from an alphabet $\Sigma$ is the minimum cost of transforming one tree into the other by a sequence of valid operations consisting of insertions, deletions…

数据结构与算法 · 计算机科学 2025-04-02 Jakob Nogler , Adam Polak , Barna Saha , Virginia Vassilevska Williams , Yinzhan Xu , Christopher Ye

We revisit classic string problems considered in the area of parameterized complexity, and study them through the lens of dynamic data structures. That is, instead of asking for a static algorithm that solves the given instance efficiently,…

数据结构与算法 · 计算机科学 2022-05-03 Jędrzej Olkowski , Michał Pilipczuk , Mateusz Rychlicki , Karol Węgrzycki , Anna Zych-Pawlewicz

In many applications, it is necessary to determine the string similarity. Edit distance[WF74] approach is a classic method to determine Field Similarity. A well known dynamic programming algorithm [GUS97] is used to calculate edit distance…

数据结构与算法 · 计算机科学 2007-05-23 Qi Xiao Yang , Sung Sam Yuan , Lu Chun , Li Zhao , Sun Peng

A stable or locally-optimal cut of a graph is a cut whose weight cannot be increased by changing the side of a single vertex. In this paper we study Minimum Stable Cut, the problem of finding a stable cut of minimum weight. Since this…

计算复杂性 · 计算机科学 2026-04-08 Michael Lampis

Dynamic Time Warping (DTW) is a widely used similarity measure for comparing strings that encode time series data, with applications to areas including bioinformatics, signature verification, and speech recognition. The standard…

数据结构与算法 · 计算机科学 2022-07-05 Zoe Xi , William Kuszmaul

Edit distance between trees is a natural generalization of the classical edit distance between strings, in which the allowed elementary operations are contraction, uncontraction and relabeling of an edge. Demaine et al. [ACM Trans. on…

数据结构与算法 · 计算机科学 2018-04-27 Bartłomiej Dudek , Paweł Gawrychowski
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