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Effectively modeling multimodal spatial omics data is critical for understanding tissue complexity and underlying biological mechanisms. While spatial transcriptomics, proteomics, and epigenomics capture molecular features, they lack…

计算机视觉与模式识别 · 计算机科学 2025-11-18 Yongjun Xiao , Dian Meng , Xinlei Huang , Yanran Liu , Shiwei Ruan , Ziyue Qiao , Xubin Zheng

Accurate interpretation of knee MRI scans relies on expert clinical judgment, often with high variability and limited scalability. Existing radiomic approaches use a fixed set of radiomic features (the signature), selected at the population…

计算机视觉与模式识别 · 计算机科学 2025-06-26 Yaxi Chen , Simin Ni , Shaheer U. Saeed , Aleksandra Ivanova , Rikin Hargunani , Jie Huang , Chaozong Liu , Yipeng Hu

Classical radiomic features are designed to quantify image appearance and intensity patterns. Compared with end-to-end deep learning (DL) models trained for disease classification, radiomics pipelines with low-dimensional parametric…

计算机视觉与模式识别 · 计算机科学 2026-03-04 Yaxi Chen , Simin Ni , Jingjing Zhang , Shaheer U. Saeed , Yipei Wang , Aleksandra Ivanova , Rikin Hargunani , Chaozong Liu , Jie Huang , Yipeng Hu

Cardiac magnetic resonance imaging (CMR), considered the gold standard for noninvasive cardiac assessment, is a diverse and complex modality requiring a wide variety of image processing tasks for comprehensive assessment of cardiac…

图像与视频处理 · 电气工程与系统科学 2025-12-03 Athira J Jacob , Indraneel Borgohain , Teodora Chitiboi , Puneet Sharma , Dorin Comaniciu , Daniel Rueckert

Currently, a large number of stored tissue samples are unavailable for spectroscopic study without the time consuming and destructive process of paraffin removal. Instead, a structurally sensitive technique, sum frequency generation, and a…

医学物理 · 物理学 2023-10-03 Bryan Semon , Michael Jaffe , Haifeng Wang , Lauren Priddy , Gombojav Ariunbold

Large numbers of radiographic images are available in knee radiology practices which could be used for training of deep learning models for diagnosis of knee abnormalities. However, those images do not typically contain readily available…

图像与视频处理 · 电气工程与系统科学 2023-09-07 Jikai Zhang , Carlos Santos , Christine Park , Maciej Mazurowski , Roy Colglazier

Purpose: The aim of this study was to demonstrate the utility of unsupervised domain adaptation (UDA) in automated knee osteoarthritis (OA) phenotype classification using a small dataset (n=50). Materials and Methods: For this retrospective…

图像与视频处理 · 电气工程与系统科学 2023-10-31 Junru Zhong , Yongcheng Yao , Donal G. Cahill , Fan Xiao , Siyue Li , Jack Lee , Kevin Ki-Wai Ho , Michael Tim-Yun Ong , James F. Griffith , Weitian Chen

Automatic labelling of anatomical structures, such as coronary arteries, is critical for diagnosis, yet existing (non-deep learning) methods are limited by a reliance on prior topological knowledge of the expected tree-like structures. As…

图像与视频处理 · 电气工程与系统科学 2024-03-05 Yadan Li , Mohammad Ali Armin , Simon Denman , David Ahmedt-Aristizabal

Precision medicine in musculoskeletal imaging requires scalable measurement infrastructure. We developed a modular system that converts routine MRI into standardized quantitative biomarkers suitable for clinical decision support. Promptable…

图像与视频处理 · 电气工程与系统科学 2026-04-06 Gabrielle Hoyer , Michelle W Tong , Rupsa Bhattacharjee , Valentina Pedoia , Sharmila Majumdar

The rapid advancement of medical technology has led to an exponential increase in multi-modal medical data, including imaging, genomics, and electronic health records (EHRs). Graph neural networks (GNNs) have been widely used to represent…

定量方法 · 定量生物学 2024-10-03 Favour Nerrise , Alice Louise Heiman , Ehsan Adeli

Healthcare data now span EHRs, medical imaging, genomics, and wearable sensors, but most diagnostic models still process these modalities in isolation. This limits their ability to capture early, cross-modal disease signatures. This paper…

机器学习 · 计算机科学 2025-12-18 Md Talha Mohsin , Ismail Abdulrashid

Scoliosis diagnosis and assessment depend largely on the measurement of the Cobb angle in spine X-ray images. With the emergence of deep learning techniques that employ landmark detection, tilt prediction, and spine segmentation, automated…

图像与视频处理 · 电气工程与系统科学 2023-09-26 Zhengxuan Qiu , Jie Yang , Jiankun Wang

Multimodal MRI offers complementary multi-scale information to characterize the brain structure. However, it remains challenging to effectively integrate multimodal MRI while achieving neuroscience interpretability. Here we propose to use…

神经元与认知 · 定量生物学 2025-12-15 Chengzhi Xia , Jianwei Chen , Yixuan Jiang , Qi Yan , Chao Li

Parkinson's Disease (PD) affects millions globally, impacting movement. Prior research utilized deep learning for PD prediction, primarily focusing on medical images, neglecting the data's underlying manifold structure. This work proposes a…

计算机视觉与模式识别 · 计算机科学 2024-08-27 Jun-En Ding , Chien-Chin Hsu , Feng Liu

Brain MRI foundation models learn rich representations of anatomy, but interpreting what clinical information they encode remains an open problem. Standard sparse autoencoders (SAEs) suffer from severe feature collapse in deep transformer…

计算机视觉与模式识别 · 计算机科学 2026-05-05 Favour Nerrise , Lucy Yin , Mohammad H. Abbasi , Kilian M. Pohl , Ehsan Adeli

Widefield microscopy is widely used for non-invasive imaging of biological structures at subcellular resolution. When applied to complex specimen, its image quality is degraded by sample-induced optical aberration. Adaptive optics can…

图像与视频处理 · 电气工程与系统科学 2025-03-11 Iksung Kang , Qinrong Zhang , Stella X. Yu , Na Ji

Magnetic resonance (MR) protocols rely on several sequences to assess pathology and organ status properly. Despite advances in image analysis, we tend to treat each sequence, here termed modality, in isolation. Taking advantage of the…

计算机视觉与模式识别 · 计算机科学 2020-11-11 Agisilaos Chartsias , Giorgos Papanastasiou , Chengjia Wang , Scott Semple , David E. Newby , Rohan Dharmakumar , Sotirios A. Tsaftaris

Alzheimers Disease (AD) is a progressive neurodegenerative disorder that poses significant challenges in its early diagnosis, often leading to delayed treatment and poorer outcomes for patients. Traditional diagnostic methods, typically…

机器学习 · 计算机科学 2025-08-06 Tatwadarshi P Nagarhalli , Sanket Patil , Vishal Pande , Uday Aswalekar , Prafulla Patil

Current methods for multimodal medical imaging based disease recognition face two major challenges. First, the prevailing "fusion after unimodal image embedding" paradigm cannot fully leverage the complementary and correlated information in…

计算机视觉与模式识别 · 计算机科学 2026-04-07 Qijie Wei , Hailan Lin , Xirong Li

Image segmentation in total knee arthroplasty is crucial for precise preoperative planning and accurate implant positioning, leading to improved surgical outcomes and patient satisfaction. The biggest challenges of image segmentation in…

图像与视频处理 · 电气工程与系统科学 2024-05-28 Viet Dung Nguyen , Michael T. LaCour , Richard D. Komistek