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Recent years have seen a rapid growth of utilizing graph neural networks (GNNs) in the biomedical domain for tackling drug-related problems. However, like any other deep architectures, GNNs are data hungry. While requiring labels in real…

生物物理 · 物理学 2022-05-03 Mengying Sun , Jing Xing , Huijun Wang , Bin Chen , Jiayu Zhou

Graphs are fundamental mathematical structures used in various fields to represent data, signals and processes. In this paper, we propose a novel framework for learning/estimating graphs from data. The proposed framework includes (i)…

机器学习 · 计算机科学 2017-07-07 Hilmi E. Egilmez , Eduardo Pavez , Antonio Ortega

Various graph contrastive learning models have been proposed to improve the performance of learning tasks on graph datasets in recent years. While effective and prevalent, these models are usually carefully customized. In particular,…

机器学习 · 计算机科学 2021-11-01 Dongkuan Xu , Wei Cheng , Dongsheng Luo , Haifeng Chen , Xiang Zhang

Graph contrastive learning is usually performed by first conducting Graph Data Augmentation (GDA) and then employing a contrastive learning pipeline to train GNNs. As we know that GDA is an important issue for graph contrastive learning.…

机器学习 · 计算机科学 2024-01-09 Ziyan Zhang , Bo Jiang , Jin Tang , Bin Luo

Graph contrastive learning (GCL) has recently emerged as a new concept which allows for capitalizing on the strengths of graph neural networks (GNNs) to learn rich representations in a wide variety of applications which involve abundant…

机器学习 · 计算机科学 2024-06-26 Yuzhou Chen , Jose Frias , Yulia R. Gel

Graphon is a nonparametric model that generates graphs with arbitrary sizes and can be induced from graphs easily. Based on this model, we propose a novel algorithmic framework called \textit{graphon autoencoder} to build an interpretable…

机器学习 · 计算机科学 2021-06-01 Hongteng Xu , Peilin Zhao , Junzhou Huang , Dixin Luo

Graph Neural Networks (GNNs) have demonstrated promising results on exploiting node representations for many downstream tasks through supervised end-to-end training. To deal with the widespread label scarcity issue in real-world…

机器学习 · 计算机科学 2023-08-02 Cheng Wu , Chaokun Wang , Jingcao Xu , Ziyang Liu , Kai Zheng , Xiaowei Wang , Yang Song , Kun Gai

The goal of graph representation learning is to embed each vertex in a graph into a low-dimensional vector space. Existing graph representation learning methods can be classified into two categories: generative models that learn the…

机器学习 · 计算机科学 2017-11-23 Hongwei Wang , Jia Wang , Jialin Wang , Miao Zhao , Weinan Zhang , Fuzheng Zhang , Xing Xie , Minyi Guo

While the celebrated graph neural networks yield effective representations for individual nodes of a graph, there has been relatively less success in extending to the task of graph similarity learning. Recent work on graph similarity…

机器学习 · 计算机科学 2021-08-20 Xiang Ling , Lingfei Wu , Saizhuo Wang , Tengfei Ma , Fangli Xu , Alex X. Liu , Chunming Wu , Shouling Ji

Recently, some contrastive learning methods have been proposed to simultaneously learn representations and clustering assignments, achieving significant improvements. However, these methods do not take the category information and…

计算机视觉与模式识别 · 计算机科学 2021-04-06 Huasong Zhong , Jianlong Wu , Chong Chen , Jianqiang Huang , Minghua Deng , Liqiang Nie , Zhouchen Lin , Xian-Sheng Hua

Graph-based models and contrastive learning have emerged as prominent methods in Collaborative Filtering (CF). While many existing models in CF incorporate these methods in their design, there seems to be a limited depth of analysis…

信息检索 · 计算机科学 2024-06-24 Yihong Wu , Le Zhang , Fengran Mo , Tianyu Zhu , Weizhi Ma , Jian-Yun Nie

Graph convolutional networks (GCNs) are a widely used method for graph representation learning. We investigate the power of GCNs, as a function of their number of layers, to distinguish between different random graph models on the basis of…

机器学习 · 统计学 2020-02-14 Abram Magner , Mayank Baranwal , Alfred O. Hero

Graph contrastive learning (GCL), as a popular approach to graph self-supervised learning, has recently achieved a non-negligible effect. To achieve superior performance, the majority of existing GCL methods elaborate on graph data…

机器学习 · 计算机科学 2022-05-03 Yuansheng Wang , Wangbin Sun , Kun Xu , Zulun Zhu , Liang Chen , Zibin Zheng

Graph generation is a crucial task in many fields, including network science and bioinformatics, as it enables the creation of synthetic graphs that mimic the properties of real-world networks for various applications. Graph Generative…

机器学习 · 计算机科学 2026-01-21 Salvatore Romano , Marco Grassia , Giuseppe Mangioni

Graph-level representations are critical in various real-world applications, such as predicting the properties of molecules. But in practice, precise graph annotations are generally very expensive and time-consuming. To address this issue,…

机器学习 · 计算机科学 2022-07-26 Shuai Lin , Pan Zhou , Zi-Yuan Hu , Shuojia Wang , Ruihui Zhao , Yefeng Zheng , Liang Lin , Eric Xing , Xiaodan Liang

Graph Contrastive Learning (GCL) has emerged as a powerful paradigm for training Graph Neural Networks (GNNs) in the absence of task-specific labels. However, its scalability on large-scale graphs is hindered by the intensive message…

机器学习 · 计算机科学 2025-11-12 Xiang Chen , Kun Yue , Wenjie Liu , Zhenyu Zhang , Liang Duan

Graph contrastive learning (GCL) is an effective paradigm for node representation learning in graphs. The key components hidden behind GCL are data augmentation and positive-negative pair selection. Typical data augmentations in GCL, such…

机器学习 · 计算机科学 2024-07-25 Jiaqiang Zhang , Songcan Chen

Fair graph learning plays a pivotal role in numerous practical applications. Recently, many fair graph learning methods have been proposed; however, their evaluation often relies on poorly constructed semi-synthetic datasets or substandard…

机器学习 · 计算机科学 2024-06-19 Xiaowei Qian , Zhimeng Guo , Jialiang Li , Haitao Mao , Bingheng Li , Suhang Wang , Yao Ma

Graphs serve as fundamental descriptors for systems composed of interacting elements, capturing a wide array of data types, from molecular interactions to social networks and knowledge graphs. In this paper, we present an exhaustive review…

机器学习 · 计算机科学 2024-11-13 Chenqing Hua

Exchangeable random graphs, which include some of the most widely studied network models, have emerged as the mainstay of statistical network analysis in recent years. Graphons, which are the central objects in graph limit theory, provide a…

统计理论 · 数学 2024-09-17 Anirban Chatterjee , Soham Dan , Bhaswar B. Bhattacharya