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Graph based molecular representation learning is essential for accurately predicting molecular properties in drug discovery and materials science; however, it faces significant challenges due to the intricate relationships among molecules…

计算工程、金融与科学 · 计算机科学 2025-05-28 Zhengyang Zhou , Yunrui Li , Pengyu Hong , Hao Xu

High-throughput molecular profiling technologies have produced high-dimensional multi-omics data, enabling systematic understanding of living systems at the genome scale. Studying molecular interactions across different data types helps…

机器学习 · 计算机科学 2020-10-23 Ehsan Hajiramezanali , Arman Hasanzadeh , Nick Duffield , Krishna R Narayanan , Xiaoning Qian

Many recent studies have focused on fine-tuning pre-trained models for speech emotion recognition (SER), resulting in promising performance compared to traditional methods that rely largely on low-level, knowledge-inspired acoustic…

声音 · 计算机科学 2024-02-15 Tiantian Feng , Shrikanth Narayanan

Although Vision Language Models (VLMs) have shown strong generalization in medical imaging, pathology presents unique challenges due to ultra-high resolution, complex tissue structures, and nuanced clinical semantics. These factors make…

计算机视觉与模式识别 · 计算机科学 2026-03-24 Wenchuan Zhang , Jingru Guo , Hengzhe Zhang , Penghao Zhang , Jie Chen , Shuwan Zhang , Zhang Zhang , Yuhao Yi , Hong Bu

Effectiveness of speech emotion recognition in real-world scenarios is often hindered by noisy environments and variability across datasets. This paper introduces a two-step approach to enhance the robustness and generalization of speech…

声音 · 计算机科学 2025-10-13 Upasana Tiwari , Rupayan Chakraborty , Sunil Kumar Kopparapu

Methods for extracting audio and speech features have been studied since pioneering work on spectrum analysis decades ago. Recent efforts are guided by the ambition to develop general-purpose audio representations. For example, deep neural…

Features of the same sample generated by different pretrained models often exhibit inherently distinct feature distributions because of discrepancies in the model pretraining objectives or architectures. Learning invariant representations…

计算机视觉与模式识别 · 计算机科学 2026-02-05 Jie Chen , Zhu Wang , Chuanbin Liu , Xi Peng

Medical language-guided segmentation, integrating textual clinical reports as auxiliary guidance to enhance image segmentation, has demonstrated significant improvements over unimodal approaches. However, its inherent reliance on paired…

计算机视觉与模式识别 · 计算机科学 2025-07-22 Shuchang Ye , Usman Naseem , Mingyuan Meng , Jinman Kim

Self-supervised graph representation learning (SSGRL) is a representation learning paradigm used to reduce or avoid manual labeling. An essential part of SSGRL is graph data augmentation. Existing methods usually rely on heuristics commonly…

机器学习 · 计算机科学 2024-12-25 Ahmed E. Samy , Zekarias T. Kefatoa , Sarunas Girdzijauskasa

Decoding neural visual representations from electroencephalogram (EEG)-based brain activity is crucial for advancing brain-machine interfaces (BMI) and has transformative potential for neural sensory rehabilitation. While multimodal…

计算机视觉与模式识别 · 计算机科学 2025-03-25 Yueyang Li , Zijian Kang , Shengyu Gong , Wenhao Dong , Weiming Zeng , Hongjie Yan , Wai Ting Siok , Nizhuan Wang

We propose Derivative Learning (DERL), a supervised approach that models physical systems by learning their partial derivatives. We also leverage DERL to build physical models incrementally, by designing a distillation protocol that…

机器学习 · 计算机科学 2026-01-26 Alessandro Trenta , Andrea Cossu , Davide Bacciu

Proteins are inherently multiscale physical systems whose functional properties emerge from coordinated structural organization across multiple spatial resolutions, ranging from atomic interactions to global fold topology. However, existing…

机器学习 · 计算机科学 2026-05-13 Viet Thanh Duy Nguyen , John K. Johnstone , Truong-Son Hy

Fine-tuning pre-trained language models for multiple tasks tends to be expensive in terms of storage. To mitigate this, parameter-efficient transfer learning (PETL) methods have been proposed to address this issue, but they still require a…

计算与语言 · 计算机科学 2023-06-13 Guangtao Zeng , Peiyuan Zhang , Wei Lu

Proteins are fundamental biological entities mediating key roles in cellular function and disease. This paper introduces a multi-scale graph construction of a protein -- HoloProt -- connecting surface to structure and sequence. The surface…

机器学习 · 计算机科学 2022-04-06 Vignesh Ram Somnath , Charlotte Bunne , Andreas Krause

Cancer is fundamentally a genetic disease characterized by genetic and epigenetic alterations that disrupt normal gene expression, leading to uncontrolled cell growth and metastasis. High-dimensional microarray datasets pose challenges for…

Prompt learning has emerged as a promising paradigm for adapting pre-trained vision-language models (VLMs) to few-shot whole slide image (WSI) classification by aligning visual features with textual representations, thereby reducing…

计算机视觉与模式识别 · 计算机科学 2025-10-01 Junjie Zhou , Wei Shao , Yagao Yue , Wei Mu , Peng Wan , Qi Zhu , Daoqiang Zhang

Sparse Autoencoder (SAE) has emerged as a powerful tool for mechanistic interpretability of large language models. Recent works apply SAE to protein language models (PLMs), aiming to extract and analyze biologically meaningful features from…

定量方法 · 定量生物学 2026-01-21 Xiangyu Liu , Haodi Lei , Yi Liu , Yang Liu , Wei Hu

Geometric shape features have been widely used as strong predictors for image classification. Nevertheless, most existing classifiers such as deep neural networks (DNNs) directly leverage the statistical correlations between these shape…

计算机视觉与模式识别 · 计算机科学 2024-11-20 Tonmoy Hossain , Jing Ma , Jundong Li , Miaomiao Zhang

Modeling the relationship between chemical structure and molecular activity is a key goal in drug development. Many benchmark tasks have been proposed for molecular property prediction, but these tasks are generally aimed at specific,…

Multimodal emotion recognition (MMER) is an active research field that aims to accurately recognize human emotions by fusing multiple perceptual modalities. However, inherent heterogeneity across modalities introduces distribution gaps and…

声音 · 计算机科学 2023-12-22 Haoqin Sun , Shiwan Zhao , Xuechen Wang , Wenjia Zeng , Yong Chen , Yong Qin
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