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Interpreting transcriptomic data is one of the most common analytical tasks in modern biology. Yet most current models either consume expression profiles without producing natural-language biological explanations, or reason in language…

Automated chest radiographs interpretation requires both accurate disease classification and detailed radiology report generation, presenting a significant challenge in the clinical workflow. Current approaches either focus on…

计算机视觉与模式识别 · 计算机科学 2025-07-23 Difei Gu , Yunhe Gao , Yang Zhou , Mu Zhou , Dimitris Metaxas

Subword-based tokenization methods often fail to preserve morphological boundaries, a limitation especially pronounced in low-resource, morphologically complex languages such as those written in the Geez script. To address this, we present…

计算与语言 · 计算机科学 2025-09-11 Hailay Kidu Teklehaymanot , Dren Fazlija , Wolfgang Nejdl

Despite the reduction in turn-around times in radiology reports with the use of speech recognition software, persistent communication errors can significantly impact the interpretation of the radiology report. Pre-filling a radiology report…

计算与语言 · 计算机科学 2023-10-11 Qingqing Zhu , Tejas Sudharshan Mathai , Pritam Mukherjee , Yifan Peng , Ronald M. Summers , Zhiyong Lu

Background: Large language models (LLMs) are gaining use in clinical settings, but their performance can suffer with incomplete radiology reports. We tested whether multimodal LLMs (using text and images) could improve accuracy and…

图像与视频处理 · 电气工程与系统科学 2024-10-10 Choonghan Kim , Seonhee Cho , Joo Heung Yoon

Motivation: The size of available omics datasets is steadily increasing with technological advancement in recent years. While this increase in sample size can be used to improve the performance of relevant prediction tasks in healthcare,…

定量方法 · 定量生物学 2023-05-04 Jonas C. Ditz , Bernhard Reuter , Nico Pfeifer

Open-vocabulary semantic segmentation (OVSS) underpins many vision and robotics tasks that require generalizable semantic understanding. Existing approaches either rely on limited segmentation training data, which hinders generalization, or…

计算机视觉与模式识别 · 计算机科学 2026-04-13 Omar Alama , Darshil Jariwala , Avigyan Bhattacharya , Seungchan Kim , Wenshan Wang , Sebastian Scherer

Large Language Models (LLMs) are increasingly adopted across domains such as education, healthcare, and finance. In healthcare, LLMs support tasks including disease diagnosis, abnormality classification, and clinical decision-making. Among…

Clinical data-driven research requires clinical expertise, programming skills, access to patient data, and extensive documentation, creating barriers and slowing the pace for clinicians and external researchers. To address this, we…

计算与语言 · 计算机科学 2026-04-22 Taehun Kim , Hyeryun Park , Hyeonhoon Lee , Yushin Lee , Kyungsang Kim , Hyung-Chul Lee

Automating medical report generation from histopathology images is a critical challenge requiring effective visual representations and domain-specific knowledge. Inspired by the common practices of human experts, we propose an in-context…

计算机视觉与模式识别 · 计算机科学 2025-06-24 Shih-Wen Liu , Hsuan-Yu Fan , Wei-Ta Chu , Fu-En Yang , Yu-Chiang Frank Wang

Deep learning has advanced medical image classification, but interpretability challenges hinder its clinical adoption. This study enhances interpretability in Chest X-ray (CXR) classification by using concept bottleneck models (CBMs) and a…

信息检索 · 计算机科学 2025-04-30 Hasan Md Tusfiqur Alam , Devansh Srivastav , Md Abdul Kadir , Daniel Sonntag

While foundation models in radiology are expected to be applied to various clinical tasks, computational cost constraints remain a major challenge when training on 3D-CT volumetric data. In this study, we propose TotalFM, a radiological…

计算机视觉与模式识别 · 计算机科学 2026-01-05 Kohei Yamamoto , Tomohiro Kikuchi

Large language models (LLMs), including zero-shot and few-shot paradigms, have shown promising capabilities in clinical text generation. However, real-world applications face two key challenges: (1) patient data is highly unstructured,…

计算与语言 · 计算机科学 2025-07-10 Garapati Keerthana , Manik Gupta

Framing the investigation of diverse cancers as a machine learning problem has recently shown significant potential in multi-omics analysis and cancer research. Empowering these successful machine learning models are the high-quality…

基因组学 · 定量生物学 2025-06-17 Ziwei Yang , Rikuto Kotoge , Xihao Piao , Zheng Chen , Lingwei Zhu , Peng Gao , Yasuko Matsubara , Yasushi Sakurai , Jimeng Sun

Healthcare providers usually record detailed notes of the clinical care delivered to each patient for clinical, research, and billing purposes. Due to the unstructured nature of these narratives, providers employ dedicated staff to assign…

计算与语言 · 计算机科学 2022-08-03 Chufan Gao , Mononito Goswami , Jieshi Chen , Artur Dubrawski

We present MosaicFusion, a simple yet effective diffusion-based data augmentation approach for large vocabulary instance segmentation. Our method is training-free and does not rely on any label supervision. Two key designs enable us to…

计算机视觉与模式识别 · 计算机科学 2024-10-07 Jiahao Xie , Wei Li , Xiangtai Li , Ziwei Liu , Yew Soon Ong , Chen Change Loy

The vocabulary used by language models (LM) - defined by the tokenizer - plays a key role in text generation quality. However, its impact remains under-explored in radiology. In this work, we address this gap by systematically comparing…

计算与语言 · 计算机科学 2025-08-14 Hermione Warr , Wentian Xu , Harry Anthony , Yasin Ibrahim , Daniel McGowan , Konstantinos Kamnitsas

A general-purpose robot should be able to master a wide range of tasks and quickly learn a novel one by leveraging past experiences. One-shot imitation learning (OSIL) approaches this goal by training an agent with (pairs of) expert…

机器人学 · 计算机科学 2022-02-09 Zhao Mandi , Fangchen Liu , Kimin Lee , Pieter Abbeel

Background and Objective: Open-source deep learning toolkits are one of the driving forces for developing medical image segmentation models. Existing toolkits mainly focus on fully supervised segmentation and require full and accurate…

图像与视频处理 · 电气工程与系统科学 2023-02-14 Guotai Wang , Xiangde Luo , Ran Gu , Shuojue Yang , Yijie Qu , Shuwei Zhai , Qianfei Zhao , Kang Li , Shaoting Zhang

Ultrasound (US) report generation is a challenging task due to the variability of US images, operator dependence, and the need for standardized text. Unlike X-ray and CT, US imaging lacks consistent datasets, making automation difficult. In…

图像与视频处理 · 电气工程与系统科学 2025-05-20 Peixuan Ge , Tongkun Su , Faqin Lv , Baoliang Zhao , Peng Zhang , Chi Hong Wong , Liang Yao , Yu Sun , Zenan Wang , Pak Kin Wong , Ying Hu
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