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Biomedical entity linking (EL) consists of named entity recognition (NER) and named entity disambiguation (NED). EL models are trained on corpora labeled by a predefined KB. However, it is a common scenario that only entities within a…

计算与语言 · 计算机科学 2023-06-06 Hongyi Yuan , Keming Lu , Zheng Yuan

Named-entity recognition (NER) in low-resource languages is usually tackled by finetuning very large multilingual LMs, an option that is often infeasible in memory- or latency-constrained settings. We ask whether small decoder LMs can be…

计算与语言 · 计算机科学 2025-10-07 David Demitri Africa , Suchir Salhan , Yuval Weiss , Paula Buttery , Richard Diehl Martinez

Few-shot NER aims to identify entities of target types with only limited number of illustrative instances. Unfortunately, few-shot NER is severely challenged by the intrinsic precise generalization problem, i.e., it is hard to accurately…

计算与语言 · 计算机科学 2024-03-26 Jiawei Chen , Hongyu Lin , Xianpei Han , Yaojie Lu , Shanshan Jiang , Bin Dong , Le Sun

Biomedical named entity recognition (NER) is a high-utility natural language processing (NLP) task, and large language models (LLMs) show promise particularly in few-shot settings (i.e., limited training data). In this article, we address…

计算与语言 · 计算机科学 2025-08-12 Yao Ge , Sudeshna Das , Yuting Guo , Abeed Sarker

Despite their strong linguistic capabilities, Large Language Models (LLMs) are computationally demanding and require substantial resources for fine-tuning, which is unadapted to privacy and budget constraints of many healthcare settings. To…

计算与语言 · 计算机科学 2026-04-30 Pierre Epron , Adrien Coulet , Mehwish Alam

Biomedical named entity recognition (NER) is a critial task that aims to identify structured information in clinical text, which is often replete with complex, technical terms and a high degree of variability. Accurate and reliable NER can…

计算与语言 · 计算机科学 2023-05-30 Zhiyi Li , Shengjie Zhang , Yujie Song , Jungyeul Park

Biomedical named entity recognition (NER) and entity linking (EL) strongly depend on annotated corpora, but the utility of these resources for benchmarking is often assumed rather than characterized. We present a corpus-centric framework…

计算与语言 · 计算机科学 2026-05-21 Robert Leaman , Rezarta Islamaj , Zhiyong Lu

Named Entity Recognition (NER) is an important subtask of information extraction that seeks to locate and recognise named entities. Despite recent achievements, we still face limitations in correctly detecting and classifying entities,…

信息检索 · 计算机科学 2018-09-07 Diego Esteves

Most state-of-the-art models for named entity recognition (NER) rely on the availability of large amounts of labeled data, making them challenging to extend to new, lower-resourced languages. However, there are now several proposed…

计算与语言 · 计算机科学 2019-08-27 Aditi Chaudhary , Jiateng Xie , Zaid Sheikh , Graham Neubig , Jaime G. Carbonell

Named entity recognition (NER) of chemicals and drugs is a critical domain of information extraction in biochemical research. NER provides support for text mining in biochemical reactions, including entity relation extraction, attribute…

计算与语言 · 计算机科学 2020-12-22 Jian Liu , Lei Gao , Sujie Guo , Rui Ding , Xin Huang , Long Ye , Qinghua Meng , Asef Nazari , Dhananjay Thiruvady

Entity Matching (EM)--the task of determining whether two data records refer to the same real-world entity--is a core task in data integration. Recent advances in deep learning have set a new standard for EM, particularly through…

数据库 · 计算机科学 2026-03-18 Nicholas Pulsone , Roee Shraga , Gregory Goren

Few-shot Named Entity Recognition (NER) exploits only a handful of annotations to identify and classify named entity mentions. Prototypical network shows superior performance on few-shot NER. However, existing prototypical methods fail to…

计算与语言 · 计算机科学 2021-06-30 Meihan Tong , Shuai Wang , Bin Xu , Yixin Cao , Minghui Liu , Lei Hou , Juanzi Li

Current work in named entity recognition (NER) uses either cross entropy (CE) or conditional random fields (CRF) as the objective/loss functions to optimize the underlying NER model. Both of these traditional objective functions for the NER…

计算与语言 · 计算机科学 2023-04-17 Ngoc Dang Nguyen , Wei Tan , Wray Buntine , Richard Beare , Changyou Chen , Lan Du

Current machine learning has made great progress on computer vision and many other fields attributed to the large amount of high-quality training samples, while it does not work very well on genomic data analysis, since they are notoriously…

机器学习 · 计算机科学 2020-09-04 Ziyi Yang , Jun Shu , Yong Liang , Deyu Meng , Zongben Xu

Named Entity Recognition (NER) and Entity Linking (EL) play an essential role in voice assistant interaction, but are challenging due to the special difficulties associated with spoken user queries. In this paper, we propose a novel…

Semantic segmentation has a broad range of applications, but its real-world impact has been significantly limited by the prohibitive annotation costs necessary to enable deployment. Segmentation methods that forgo supervision can side-step…

计算机视觉与模式识别 · 计算机科学 2022-06-15 Gyungin Shin , Weidi Xie , Samuel Albanie

Being able to train Named Entity Recognition (NER) models for emerging topics is crucial for many real-world applications especially in the medical domain where new topics are continuously evolving out of the scope of existing models and…

计算与语言 · 计算机科学 2022-10-11 Aleksander Ficek , Fangyu Liu , Nigel Collier

Named entity recognition (NER) is a well-studied task in natural language processing. Traditional NER research only deals with flat entities and ignores nested entities. The span-based methods treat entity recognition as a span…

计算与语言 · 计算机科学 2021-07-14 Yongliang Shen , Xinyin Ma , Zeqi Tan , Shuai Zhang , Wen Wang , Weiming Lu

Motivation: Biomedical named-entity normalization involves connecting biomedical entities with distinct database identifiers in order to facilitate data integration across various fields of biology. Existing systems for biomedical named…

计算与语言 · 计算机科学 2023-10-24 Zainab Awan , Tim Kahlke , Peter Ralph , Paul Kennedy

Semantic segmentation is a classic computer vision task with multiple applications, which includes medical and remote sensing image analysis. Despite recent advances with deep-based approaches, labeling samples (pixels) for training models…

计算机视觉与模式识别 · 计算机科学 2021-09-07 Pedro H. T. Gama , Hugo Oliveira , José Marcato Junior , Jefersson A. dos Santos