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Atlas building and image registration are important tasks for medical image analysis. Once one or multiple atlases from an image population have been constructed, commonly (1) images are warped into an atlas space to study intra-subject or…

图像与视频处理 · 电气工程与系统科学 2022-04-04 Zhipeng Ding , Marc Niethammer

Purpose: Segmentation of organs-at-risk (OARs) is a bottleneck in current radiation oncology pipelines and is often time consuming and labor intensive. In this paper, we propose an atlas-based semi-supervised registration algorithm to…

计算机视觉与模式识别 · 计算机科学 2019-11-26 Charles Huang , Masoud Badiei , Hyunseok Seo , Ming Ma , Xiaokun Liang , Dante Capaldi , Michael Gensheimer , Lei Xing

In many learning situations, resources at inference time are significantly more constrained than resources at training time. This paper studies a general paradigm, called Differentiable ARchitecture Compression (DARC), that combines model…

机器学习 · 计算机科学 2019-05-21 Shashank Singh , Ashish Khetan , Zohar Karnin

Anatomical atlases are widely used for population studies and analysis. Conditional atlases target a specific sub-population defined via certain conditions, such as demographics or pathologies, and allow for the investigation of…

图像与视频处理 · 电气工程与系统科学 2025-06-25 Sophie Starck , Vasiliki Sideri-Lampretsa , Bernhard Kainz , Martin J. Menten , Tamara T. Mueller , Daniel Rueckert

We present MultiMorph, a fast and efficient method for constructing anatomical atlases on the fly. Atlases capture the canonical structure of a collection of images and are essential for quantifying anatomical variability across…

计算机视觉与模式识别 · 计算机科学 2025-04-02 S. Mazdak Abulnaga , Andrew Hoopes , Neel Dey , Malte Hoffmann , Marianne Rakic , Bruce Fischl , John Guttag , Adrian Dalca

In medical image analysis, constructing an atlas, i.e. a mean representative of an ensemble of images, is a critical task for practitioners to estimate variability of shapes inside a population, and to characterise and understand how…

Deformable templates, or atlases, are images that represent a prototypical anatomy for a population, and are often enhanced with probabilistic anatomical label maps. They are commonly used in medical image analysis for population studies…

计算机视觉与模式识别 · 计算机科学 2025-11-18 Marianne Rakic , Andrew Hoopes , S. Mazdak Abulnaga , Mert R. Sabuncu , John V. Guttag , Adrian V. Dalca

Large deformations of organs, caused by diverse shapes and nonlinear shape changes, pose a significant challenge for medical image registration. Traditional registration methods need to iteratively optimize an objective function via a…

图像与视频处理 · 电气工程与系统科学 2022-05-03 Ziwei Luo , Jing Hu , Xin Wang , Shu Hu , Bin Kong , Youbing Yin , Qi Song , Xi Wu , Siwei Lyu

Diffusion models have become the dominant approach for visual generation. They are trained by denoising a Markovian process which gradually adds noise to the input. We argue that the Markovian property limits the model's ability to fully…

计算机视觉与模式识别 · 计算机科学 2025-01-24 Jiatao Gu , Yuyang Wang , Yizhe Zhang , Qihang Zhang , Dinghuai Zhang , Navdeep Jaitly , Josh Susskind , Shuangfei Zhai

This article presents a general Bayesian learning framework for multi-modal groupwise image registration. The method builds on probabilistic modelling of the image generative process, where the underlying common anatomy and geometric…

计算机视觉与模式识别 · 计算机科学 2025-09-16 Xinzhe Luo , Xin Wang , Linda Shapiro , Chun Yuan , Jianfeng Feng , Xiahai Zhuang

Deformable medical image registration is a fundamental task in medical image analysis. While deep learning-based methods have demonstrated superior accuracy and computational efficiency compared to traditional techniques, they often…

计算机视觉与模式识别 · 计算机科学 2025-10-23 Ahsan Raza Siyal , Markus Haltmeier , Ruth Steiger , Malik Galijasevic , Elke Ruth Gizewski , Astrid Ellen Grams

Deformable medical image registration is a crucial aspect of medical image analysis. In recent years, researchers have begun leveraging auxiliary tasks (such as supervised segmentation) to provide anatomical structure information for the…

计算机视觉与模式识别 · 计算机科学 2024-10-01 Hongchao Zhou , Shunbo Hu

Multimodal image registration is a challenging but essential step for numerous image-guided procedures. Most registration algorithms rely on the computation of complex, frequently non-differentiable similarity metrics to deal with the…

计算机视觉与模式识别 · 计算机科学 2023-07-20 Matteo Ronchetti , Wolfgang Wein , Nassir Navab , Oliver Zettinig , Raphael Prevost

Medical image analysis tasks often focus on regions or structures located in a particular location within the patient's body. Often large parts of the image may not be of interest for the image analysis task. When using deep-learning based…

计算机视觉与模式识别 · 计算机科学 2024-11-01 Thomas Buddenkotte , Roland Opfer , Julia Krüger , Alessa Hering , Mireia Crispin-Ortuzar

Differentiable architecture search (DARTS) has been a mainstream direction in automatic machine learning. Since the discovery that original DARTS will inevitably converge to poor architectures, recent works alleviate this by either…

计算机视觉与模式识别 · 计算机科学 2022-11-21 Bicheng Guo , Shuxuan Guo , Miaojing Shi , Peng Chen , Shibo He , Jiming Chen , Kaicheng Yu

Deep learning has a great potential for estimating biomarkers in diffusion weighted magnetic resonance imaging (dMRI). Atlases, on the other hand, are a unique tool for modeling the spatio-temporal variability of biomarkers. In this paper,…

医学物理 · 物理学 2022-05-09 Davood Karimi , Ali Gholipour

Diffeomorphic deformable image registration is one of the crucial tasks in medical image analysis, which aims to find a unique transformation while preserving the topology and invertibility of the transformation. Deep convolutional neural…

图像与视频处理 · 电气工程与系统科学 2022-02-09 Ameneh Sheikhjafari , Michelle Noga , Kumaradevan Punithakumar , Nilanjan Ray

Probabilistic atlases provide essential spatial contextual information for image interpretation, Bayesian modeling, and algorithmic processing. Such atlases are typically constructed by grouping subjects with similar demographic…

机器学习 · 计算机科学 2018-06-07 Yuankai Huo , Katherine Swett , Susan M. Resnick , Laurie E. Cutting , Bennett A. Landman

Conventional deformable registration methods aim at solving an optimization model carefully designed on image pairs and their computational costs are exceptionally high. In contrast, recent deep learning based approaches can provide fast…

计算机视觉与模式识别 · 计算机科学 2021-10-01 Risheng Liu , Zi Li , Xin Fan , Chenying Zhao , Hao Huang , Zhongxuan Luo

Registration-based atlas building often poses computational challenges in high-dimensional image spaces. In this paper, we introduce a novel hybrid atlas building algorithm that fast estimates atlas from large-scale image datasets with much…

计算机视觉与模式识别 · 计算机科学 2022-02-15 Nian Wu , Jian Wang , Miaomiao Zhang , Guixu Zhang , Yaxin Peng , Chaomin Shen
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