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Graph contrastive learning (GCL), as a self-supervised learning method, can solve the problem of annotated data scarcity. It mines explicit features in unannotated graphs to generate favorable graph representations for downstream tasks.…

机器学习 · 计算机科学 2024-04-02 Jinhuan Wang , Jiafei Shao , Zeyu Wang , Shanqing Yu , Qi Xuan , Xiaoniu Yang

Multi-view clustering is an important machine learning task for multi-media data, encompassing various domains such as images, videos, and texts. Moreover, with the growing abundance of graph data, the significance of multi-view graph…

机器学习 · 计算机科学 2024-10-31 Zichen Wen , Tianyi Wu , Yazhou Ren , Yawen Ling , Chenhang Cui , Xiaorong Pu , Lifang He

Graph based clustering is one of the major clustering methods. Most of it work in three separate steps: similarity graph construction, clustering label relaxing and label discretization with k-means. Such common practice has three…

机器学习 · 计算机科学 2019-04-26 Yudong Han , Lei Zhu , Zhiyong Cheng , Jingjing Li , Xiaobai Liu

Graph anomaly detection (GAD) aims to identify nodes that deviate from normal patterns in structure or features. While recent GNN-based approaches have advanced this task, they struggle with two major challenges: 1) homophily disparity,…

机器学习 · 计算机科学 2026-03-10 Yunhui Liu , Qizhuo Xie , Yinfeng Chen , Xudong Jin , Tao Zheng , Bin Chong , Tieke He

Classifying Antimicrobial Peptides (AMPs) from the vast collection of peptides derived from metagenomic sequencing offers a promising avenue for combating antibiotic resistance. However, most existing AMP classification methods rely…

定量方法 · 定量生物学 2026-01-15 Yingxu Wang , Victor Liang , Nan Yin , Siwei Liu , Eran Segal

Graph Representation Learning (GRL) is an influential methodology, enabling a more profound understanding of graph-structured data and aiding graph clustering, a critical task across various domains. The recent incursion of attention…

机器学习 · 计算机科学 2023-08-15 Shuo Han , Jiacheng Liu , Jiayun Wu , Yinan Chen , Li Tao

Graph contrastive learning (GCL) aligns node representations by classifying node pairs into positives and negatives using a selection process that typically relies on establishing correspondences within two augmented graphs. The…

机器学习 · 计算机科学 2024-11-27 Maysam Behmanesh , Maks Ovsjanikov

Graph clustering is a crucial task in network analysis with widespread applications, focusing on partitioning nodes into distinct groups with stronger intra-group connections than inter-group ones. Recently, contrastive learning has…

机器学习 · 计算机科学 2024-08-20 Xunlian Wu , Jingqi Hu , Anqi Zhang , Yining Quan , Qiguang Miao , Peng Gang Sun

$\textbf{Graph Coarsening (GC)}$ is a prominent graph reduction technique that compresses large graphs to enable efficient learning and inference. However, existing GC methods generate only one coarsened graph per run and must recompute…

社会与信息网络 · 计算机科学 2025-05-23 Mohit Kataria , Shreyash Bhilwade , Sandeep Kumar , Jayadeva

Spatial transcriptomic (ST) clustering employs spatial and transcription information to group spots spatially coherent and transcriptionally similar together into the same spatial domain. Graph convolution network (GCN) and graph attention…

定量方法 · 定量生物学 2023-10-24 Chen Zhang , Junhui Gao , Lingxin Kong , Guangshuo cao , Xiangyu Guo , Wei Liu

Heterogeneous graph neural network (HGNN) is a very popular technique for the modeling and analysis of heterogeneous graphs. Most existing HGNN-based approaches are supervised or semi-supervised learning methods requiring graphs to be…

机器学习 · 计算机科学 2023-11-17 Cuiying Huo , Dongxiao He , Yawen Li , Di Jin , Jianwu Dang , Weixiong Zhang , Witold Pedrycz , Lingfei Wu

Given a graph $G$ and a seed node $v_s$, the objective of local graph clustering (LGC) is to identify a subgraph $C_s \in G$ (a.k.a. local cluster) surrounding $v_s$ in time roughly linear with the size of $C_s$. This approach yields…

社会与信息网络 · 计算机科学 2025-03-27 Haoran Zheng , Renchi Yang , Jianliang Xu

Graph contrastive learning (GCL) has emerged as a state-of-the-art strategy for learning representations of diverse graphs including social and biomedical networks. GCL widely uses stochastic graph topology augmentation, such as uniform…

机器学习 · 计算机科学 2024-02-22 Yucheng Wu , Leye Wang , Xiao Han , Han-Jia Ye

Heterogeneous graphs (HGs) are composed of multiple types of nodes and edges, making it more effective in capturing the complex relational structures inherent in the real world. However, in real-world scenarios, labeled data is often…

机器学习 · 计算机科学 2025-08-20 Ruobing Jiang , Yacong Li , Haobing Liu , Yanwei Yu

We introduce a novel self-supervised deep clustering approach tailored for unstructured data without requiring prior knowledge of the number of clusters, termed Adaptive Self-supervised Robust Clustering (ASRC). In particular, ASRC…

机器学习 · 计算机科学 2024-07-31 Chen-Lu Ding , Jiancan Wu , Wei Lin , Shiyang Shen , Xiang Wang , Yancheng Yuan

The exploration of cellular heterogeneity within the tumor microenvironment (TME) via single-cell RNA sequencing (scRNA-seq) is essential for understanding cancer progression and response to therapy. Current scRNA-seq approaches, however,…

基因组学 · 定量生物学 2025-02-06 Yu-An Huang , Yue-Chao Li , Hai-Ru You , Jie Pan , Xiyue Cao , Xinyuan Li , Zhi-An Huang , Zhu-Hong You

High annotation costs are a substantial bottleneck in applying modern deep learning architectures to clinically relevant medical use cases, substantiating the need for novel algorithms to learn from unlabeled data. In this work, we propose…

计算机视觉与模式识别 · 计算机科学 2021-11-29 Aiham Taleb , Matthias Kirchler , Remo Monti , Christoph Lippert

Graph Convolutional Networks (GCNs) has demonstrated promising results for recommender systems, as they can effectively leverage high-order relationship. However, these methods usually encounter data sparsity issue in real-world scenarios.…

信息检索 · 计算机科学 2023-09-21 Qian Zhao , Zhengwei Wu , Zhiqiang Zhang , Jun Zhou

Contrastive deep graph clustering (CDGC) leverages the power of contrastive learning to group nodes into different clusters. The quality of contrastive samples is crucial for achieving better performance, making augmentation techniques a…

机器学习 · 计算机科学 2024-08-07 Xihong Yang , Erxue Min , Ke Liang , Yue Liu , Siwei Wang , Sihang Zhou , Huijun Wu , Xinwang Liu , En Zhu

Given entities and their interactions in the web data, which may have occurred at different time, how can we find communities of entities and track their evolution? In this paper, we approach this important task from graph clustering…

社会与信息网络 · 计算机科学 2023-03-29 Namyong Park , Ryan Rossi , Eunyee Koh , Iftikhar Ahamath Burhanuddin , Sungchul Kim , Fan Du , Nesreen Ahmed , Christos Faloutsos