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Recent advancements in large language models (LLMs) have demonstrated impressive performance in molecular generation, which offers potential to accelerate drug discovery. However, the current LLMs overlook a critical requirement for drug…

机器学习 · 计算机科学 2025-02-18 Hyosoon Jang , Yunhui Jang , Jaehyung Kim , Sungsoo Ahn

Text-guided molecular design is a key capability for AI-driven drug discovery, yet it remains challenging to map sequential natural-language instructions with non-linear molecular structures under strict chemical constraints. Most existing…

人工智能 · 计算机科学 2026-04-23 Wengyu Zhang , Xiao-Yong Wei , Qing Li

Context. Large language models (LLMs) are increasingly applied to code-generating tasks (CGTs) in software engineering. While reported results are promising, the broader effects of such application and their integration into real-world…

软件工程 · 计算机科学 2026-05-26 Muslim Chochlov , Michael English , Jim Buckley

Large Language Models (LLMs) exhibit remarkable capabilities but remain vulnerable to adversarial manipulations such as jailbreaking, where crafted prompts bypass safety mechanisms. Understanding the causal factors behind such…

密码学与安全 · 计算机科学 2025-12-05 Wei Zhao , Zhe Li , Jun Sun

Large Language Models (LLMs) can generate biased and toxic responses. Yet most prior work on LLM gender bias evaluation requires predefined gender-related phrases or gender stereotypes, which are challenging to be comprehensively collected…

计算与语言 · 计算机科学 2023-11-02 Xiangjue Dong , Yibo Wang , Philip S. Yu , James Caverlee

Large Language Models (LLMs) excel in diverse areas, yet struggle with complex scientific reasoning, especially in the field of chemistry. Different from the simple chemistry tasks (e.g., molecule classification) addressed in previous…

计算与语言 · 计算机科学 2024-02-12 Siru Ouyang , Zhuosheng Zhang , Bing Yan , Xuan Liu , Yejin Choi , Jiawei Han , Lianhui Qin

$ $Large Language Models (LLMs) are being increasingly utilized in various applications, with code generations being a notable example. While previous research has shown that LLMs have the capability to generate both secure and insecure…

Large Language Models (LLMs) are increasingly integrated into safety-critical workflows, yet existing security analyses remain fragmented and often isolate model behavior from the broader system context. This work introduces a goal-driven…

密码学与安全 · 计算机科学 2026-03-10 Neha Nagaraja , Hayretdin Bahsi

Large language models (LLMs) have shown great potential in decision-making due to the vast amount of knowledge stored within the models. However, these pre-trained models are prone to lack reasoning abilities and are difficult to adapt to…

机器学习 · 计算机科学 2025-06-02 Wei Chen , Jiahao Zhang , Haipeng Zhu , Boyan Xu , Zhifeng Hao , Keli Zhang , Junjian Ye , Ruichu Cai

Recently a variety of LSTM-based conditional language models (LM) have been applied across a range of language generation tasks. In this work we study various model architectures and different ways to represent and aggregate the source…

The development of novel pharmaceuticals represents a significant challenge in modern science, with substantial costs and time investments. Deep generative models have emerged as promising tools for accelerating drug discovery by…

原子物理 · 物理学 2025-05-20 Adarsh Singh

Generative models for structure-based molecular design hold significant promise for drug discovery, with the potential to speed up the hit-to-lead development cycle, while improving the quality of drug candidates and reducing costs. Data…

机器学习 · 统计学 2022-04-25 Lucian Chan , Rajendra Kumar , Marcel Verdonk , Carl Poelking

Identifying latent variables and the causal structure involving them is essential across various scientific fields. While many existing works fall under the category of constraint-based methods (with e.g. conditional independence or rank…

机器学习 · 计算机科学 2026-05-21 Ignavier Ng , Xinshuai Dong , Haoyue Dai , Biwei Huang , Peter Spirtes , Kun Zhang

Traditional molecular string representations, such as SMILES, often pose challenges for AI-driven molecular design due to their non-sequential depiction of molecular substructures. To address this issue, we introduce Sequential…

机器学习 · 计算机科学 2023-12-13 Emmanuel Noutahi , Cristian Gabellini , Michael Craig , Jonathan S. C Lim , Prudencio Tossou

Simulation-based testing is crucial for validating autonomous vehicles (AVs), yet existing scenario generation methods either overfit to common driving patterns or operate in an offline, non-interactive manner that fails to expose rare,…

人工智能 · 计算机科学 2025-07-16 Yuewen Mei , Tong Nie , Jian Sun , Ye Tian

Safety hazard identification and prevention are the key elements of proactive safety management. Previous research has extensively explored the applications of computer vision to automatically identify hazards from image clips collected…

计算机视觉与模式识别 · 计算机科学 2025-04-15 Muhammad Adil , Gaang Lee , Vicente A. Gonzalez , Qipei Mei

Detecting Large Language Model (LLM)-generated code is a growing challenge with implications for security, intellectual property, and academic integrity. We investigate the role of conditional probability distributions in improving…

计算与语言 · 计算机科学 2025-06-09 Maor Ashkenazi , Ofir Brenner , Tal Furman Shohet , Eran Treister

Machine learning in drug discovery has been focused on virtual screening of molecular libraries using discriminative models. Generative models are an entirely different approach that learn to represent and optimize molecules in a continuous…

定量方法 · 定量生物学 2020-11-17 Matthew Ragoza , Tomohide Masuda , David Ryan Koes

Large language models (LLMs) have become integral to our professional workflows and daily lives. Nevertheless, these machine companions of ours have a critical flaw: the huge amount of data which endows them with vast and diverse knowledge,…

计算与语言 · 计算机科学 2024-05-21 Tinh Son Luong , Thanh-Thien Le , Linh Ngo Van , Thien Huu Nguyen

This paper introduces a comprehensive framework for the evaluation and validation of generative language models (GLMs), with a focus on Retrieval-Augmented Generation (RAG) systems deployed in high-stakes domains such as banking. GLM…

计算与语言 · 计算机科学 2024-12-10 Agus Sudjianto , Aijun Zhang , Srinivas Neppalli , Tarun Joshi , Michal Malohlava