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Automatic identification of brain lesions from magnetic resonance imaging (MRI) scans of stroke survivors would be a useful aid in patient diagnosis and treatment planning. We propose a multi-modal multi-path convolutional neural network…

计算机视觉与模式识别 · 计算机科学 2019-05-28 Yunzhe Xue , Fadi G. Farhat , Olga Boukrina , A . M. Barrett , Jeffrey R. Binder , Usman W. Roshan , William W. Graves

At many scales in neuroscience, appropriate mathematical models take the form of complex dynamical systems. Parametrising such models to conform to the multitude of available experimental constraints is a global nonlinear optimisation…

Medical time-series data captures the dynamic progression of patient conditions, playing a vital role in modern clinical decision support systems. However, real-world clinical data is highly heterogeneous and inconsistently formatted.…

机器学习 · 计算机科学 2026-04-01 Zhongheng Jiang , Yuechao Zhao , Donglin Xie , Chenxi Sun , Rongchen Lu , Silu Luo , Zisheng Liang , Shenda Hong

We present Coord2Region, an open-source Python package that streamlines coordinate-based neuroimaging workflows by automatically mapping 3D brain coordinates (e.g., MNI or Talairach) to anatomical regions across multiple atlases. The…

神经元与认知 · 定量生物学 2025-12-23 Hamza Abdelhedi , Yorguin-Jose Mantilla-Ramos , Sina Esmaeili , Annalisa Pascarella , Vanessa Hadid , Karim Jerbi

Every year, millions of brain MRI scans are acquired in hospitals, which is a figure considerably larger than the size of any research dataset. Therefore, the ability to analyse such scans could transform neuroimaging research. Yet, their…

图像与视频处理 · 电气工程与系统科学 2023-03-29 Benjamin Billot , Colin Magdamo , You Cheng , Steven E. Arnold , Sudeshna Das , Juan. E. Iglesias

State-of-the-art brain tumor segmentation is based on deep learning models applied to multi-modal MRIs. Currently, these models are trained on images after a preprocessing stage that involves registration, interpolation, brain extraction…

图像与视频处理 · 电气工程与系统科学 2022-12-29 Bruno Machado Pacheco , Guilherme de Souza e Cassia , Danilo Silva

Pseudo-normality synthesis, which computationally generates a pseudo-normal image from an abnormal one (e.g., with lesions), is critical in many perspectives, from lesion detection, data augmentation to clinical surgery suggestion. However,…

计算机视觉与模式识别 · 计算机科学 2021-06-30 Yuanqi Du , Quan Quan , Hu Han , S. Kevin Zhou

Longitudinal imaging forms an essential component in the management and follow-up of many medical conditions. The presence of lesion changes on serial imaging can have significant impact on clinical decision making, highlighting the…

图像与视频处理 · 电气工程与系统科学 2021-06-03 Minh-Son To , Ian G Sarno , Chee Chong , Mark Jenkinson , Gustavo Carneiro

Image Segmentation plays an essential role in computer vision and image processing with various applications from medical diagnosis to autonomous car driving. A lot of segmentation algorithms have been proposed for addressing specific…

计算机视觉与模式识别 · 计算机科学 2021-01-18 Yi Liu , Lutao Chu , Guowei Chen , Zewu Wu , Zeyu Chen , Baohua Lai , Yuying Hao

Acquiring large-scale medical image data, necessary for training machine learning algorithms, is frequently intractable, due to prohibitive expert-driven annotation costs. Recent datasets extracted from hospital archives, e.g., DeepLesion,…

计算机视觉与模式识别 · 计算机科学 2020-11-24 Jinzheng Cai , Adam P. Harrison , Youjing Zheng , Ke Yan , Yuankai Huo , Jing Xiao , Lin Yang , Le Lu

Performing volumetric image processing directly within the browser, particularly with medical data, presents unprecedented challenges compared to conventional backend tools. These challenges arise from limitations inherent in browser…

机器学习 · 计算机科学 2023-10-26 Mohamed Masoud , Pratyush Reddy , Farfalla Hu , Sergey Plis

In this paper we propose a novel method for the segmentation of longitudinal brain MRI scans of patients suffering from Multiple Sclerosis. The method builds upon an existing cross-sectional method for simultaneous whole-brain and lesion…

图像与视频处理 · 电气工程与系统科学 2021-01-05 Stefano Cerri , Andrew Hoopes , Douglas N. Greve , Mark Mühlau , Koen Van Leemput

For patients suffering from brain tumor, prognosis estimation and treatment decisions are made by a multidisciplinary team based on a set of preoperative MR scans. Currently, the lack of standardized and automatic methods for tumor…

A myriad of algorithms for the automatic analysis of brain MR images is available to support clinicians in their decision-making. For brain tumor patients, the image acquisition time series typically starts with an already pathological…

图像与视频处理 · 电气工程与系统科学 2024-09-24 Florian Kofler , Felix Meissen , Felix Steinbauer , Robert Graf , Stefan K Ehrlich , Annika Reinke , Eva Oswald , Diana Waldmannstetter , Florian Hoelzl , Izabela Horvath , Oezguen Turgut , Suprosanna Shit , Christina Bukas , Kaiyuan Yang , Johannes C. Paetzold , Ezequiel de da Rosa , Isra Mekki , Shankeeth Vinayahalingam , Hasan Kassem , Juexin Zhang , Ke Chen , Ying Weng , Alicia Durrer , Philippe C. Cattin , Julia Wolleb , M. S. Sadique , M. M. Rahman , W. Farzana , A. Temtam , K. M. Iftekharuddin , Maruf Adewole , Syed Muhammad Anwar , Ujjwal Baid , Anastasia Janas , Anahita Fathi Kazerooni , Dominic LaBella , Hongwei Bran Li , Ahmed W Moawad , Gian-Marco Conte , Keyvan Farahani , James Eddy , Micah Sheller , Sarthak Pati , Alexandros Karagyris , Alejandro Aristizabal , Timothy Bergquist , Verena Chung , Russell Takeshi Shinohara , Farouk Dako , Walter Wiggins , Zachary Reitman , Chunhao Wang , Xinyang Liu , Zhifan Jiang , Elaine Johanson , Zeke Meier , Ariana Familiar , Christos Davatzikos , John Freymann , Justin Kirby , Michel Bilello , Hassan M Fathallah-Shaykh , Roland Wiest , Jan Kirschke , Rivka R Colen , Aikaterini Kotrotsou , Pamela Lamontagne , Daniel Marcus , Mikhail Milchenko , Arash Nazeri , Marc-André Weber , Abhishek Mahajan , Suyash Mohan , John Mongan , Christopher Hess , Soonmee Cha , Javier Villanueva-Meyer , Errol Colak , Priscila Crivellaro , Andras Jakab , Abiodun Fatade , Olubukola Omidiji , Rachel Akinola Lagos , O O Olatunji , Goldey Khanna , John Kirkpatrick , Michelle Alonso-Basanta , Arif Rashid , Miriam Bornhorst , Ali Nabavizadeh , Natasha Lepore , Joshua Palmer , Antonio Porras , Jake Albrecht , Udunna Anazodo , Mariam Aboian , Evan Calabrese , Jeffrey David Rudie , Marius George Linguraru , Juan Eugenio Iglesias , Koen Van Leemput , Spyridon Bakas , Benedikt Wiestler , Ivan Ezhov , Marie Piraud , Bjoern H Menze

Foundation models pretrained on large-scale datasets via self-supervised learning demonstrate exceptional versatility across various tasks. Due to the heterogeneity and hard-to-collect medical data, this approach is especially beneficial…

计算工程、金融与科学 · 计算机科学 2024-03-05 Yanwu Yang , Chenfei Ye , Guinan Su , Ziyao Zhang , Zhikai Chang , Hairui Chen , Piu Chan , Yue Yu , Ting Ma

Assessment of lesions and their longitudinal progression from brain magnetic resonance (MR) images plays a crucial role in diagnosing and monitoring multiple sclerosis (MS). Machine learning models have demonstrated a great potential for…

图像与视频处理 · 电气工程与系统科学 2024-10-03 Berke Doga Basaran , Xinru Zhang , Paul M. Matthews , Wenjia Bai

Application of deep learning on histopathological whole slide images (WSIs) holds promise of improving diagnostic efficiency and reproducibility but is largely dependent on the ability to write computer code or purchase commercial…

Due to the cross-domain distribution shift aroused from diverse medical imaging systems, many deep learning segmentation methods fail to perform well on unseen data, which limits their real-world applicability. Recent works have shown the…

计算机视觉与模式识别 · 计算机科学 2023-03-06 Shangqi Gao , Hangqi Zhou , Yibo Gao , Xiahai Zhuang

The application of large language models (LLMs) in the medical field has garnered significant attention, yet their reasoning capabilities in more specialized domains like anesthesiology remain underexplored. To bridge this gap, we introduce…

计算与语言 · 计算机科学 2026-03-03 Xiang Feng , Wentao Jiang , Zengmao Wang , Yong Luo , Pingbo Xu , Baosheng Yu , Hua Jin , Jing Zhang

Magnetic resonance imaging (MRI) is a potent diagnostic tool for detecting pathological tissues in various diseases. Different MRI sequences have different contrast mechanisms and sensitivities for different types of lesions, which pose…

计算机视觉与模式识别 · 计算机科学 2025-05-13 Lijun Yan , Churan Wang , Fangwei Zhong , Yizhou Wang