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Recently, the emerging graph Transformers have made significant advancements for node classification on graphs. In most graph Transformers, a crucial step involves transforming the input graph into token sequences as the model input,…

机器学习 · 计算机科学 2024-06-28 Jinsong Chen , Siyu Jiang , Kun He

Transformers have become widely used in various tasks, such as natural language processing and machine vision. This paper proposes Gransformer, an algorithm based on Transformer for generating graphs. We modify the Transformer encoder to…

机器学习 · 计算机科学 2024-06-03 Ahmad Khajenezhad , Seyed Ali Osia , Mahmood Karimian , Hamid Beigy

Graph neural networks have been extensively studied for learning with inter-connected data. Despite this, recent evidence has revealed GNNs' deficiencies related to over-squashing, heterophily, handling long-range dependencies, edge…

机器学习 · 计算机科学 2023-06-16 Qitian Wu , Wentao Zhao , Zenan Li , David Wipf , Junchi Yan

Graph Transformer (GT), as a special type of Graph Neural Networks (GNNs), utilizes multi-head attention to facilitate high-order message passing. However, this also imposes several limitations in node classification applications: 1) nodes…

机器学习 · 计算机科学 2024-10-16 Jiajun Zhou , Xuanze Chen , Chenxuan Xie , Yu Shanqing , Qi Xuan , Xiaoniu Yang

Neuronal morphology encodes critical information about circuit function, development, and disease, yet current methods analyze topology or graph structure in isolation. We introduce GraPHFormer, a multimodal architecture that unifies these…

计算机视觉与模式识别 · 计算机科学 2026-03-24 Uzair Shah , Marco Agus , Mahmoud Gamal , Mahmood Alzubaidi , Corrado Cali , Pierre J. Magistretti , Abdesselam Bouzerdoum , Mowafa Househ

Graph Transformers have garnered significant attention for learning graph-structured data, thanks to their superb ability to capture long-range dependencies among nodes. However, the quadratic space and time complexity hinders the…

信息检索 · 计算机科学 2024-05-08 Huiyuan Chen , Zhe Xu , Chin-Chia Michael Yeh , Vivian Lai , Yan Zheng , Minghua Xu , Hanghang Tong

While tokenized graph Transformers have demonstrated strong performance in node classification tasks, their reliance on a limited subset of nodes with high similarity scores for constructing token sequences overlooks valuable information…

机器学习 · 计算机科学 2025-02-18 Jinsong Chen , Hanpeng Liu , John E. Hopcroft , Kun He

With the rapid development of online multimedia services, especially in e-commerce platforms, there is a pressing need for personalised recommendation systems that can effectively encode the diverse multi-modal content associated with each…

人工智能 · 计算机科学 2024-07-30 Zixuan Yi , Iadh Ounis

The representation learning on textual graph is to generate low-dimensional embeddings for the nodes based on the individual textual features and the neighbourhood information. Recent breakthroughs on pretrained language models and graph…

计算与语言 · 计算机科学 2023-10-10 Junhan Yang , Zheng Liu , Shitao Xiao , Chaozhuo Li , Defu Lian , Sanjay Agrawal , Amit Singh , Guangzhong Sun , Xing Xie

Multimodal learning aims to build models that can process and relate information from multiple modalities. Despite years of development in this field, it still remains challenging to design a unified network for processing various…

计算机视觉与模式识别 · 计算机科学 2023-07-21 Yiyuan Zhang , Kaixiong Gong , Kaipeng Zhang , Hongsheng Li , Yu Qiao , Wanli Ouyang , Xiangyu Yue

The growing interest in Temporal Graph Neural Networks (TGNNs) stems from their ability to model complex dynamics and deliver superior performance. However, TGNNs encounter fundamental challenges in capturing long-term dependencies and…

机器学习 · 计算机科学 2026-05-26 Hongjiang Chen , Pengfei Jiao , Ming Du , Xuan Guo , Zhidong Zhao , Di Jin , Xiao Liu

Real-world multimodal data usually exhibit complex structural relationships beyond traditional one-to-one mappings like image-caption pairs. Entities across modalities interact in intricate ways, with images and text forming diverse…

机器学习 · 计算机科学 2025-10-21 Xuying Ning , Dongqi Fu , Tianxin Wei , Wujiang Xu , Jingrui He

The recent development of multimodal single-cell technology has made the possibility of acquiring multiple omics data from individual cells, thereby enabling a deeper understanding of cellular states and dynamics. Nevertheless, the…

基因组学 · 定量生物学 2023-10-16 Wenzhuo Tang , Hongzhi Wen , Renming Liu , Jiayuan Ding , Wei Jin , Yuying Xie , Hui Liu , Jiliang Tang

Spectral Graph Neural Networks have demonstrated superior performance in graph representation learning. However, many current methods focus on employing shared polynomial coefficients for all nodes, i.e., learning node-unified filters,…

机器学习 · 计算机科学 2024-07-22 Jiahong Ma , Mingguo He , Zhewei Wei

Discrete-Time Dynamic Graphs (DTDGs), which are prevalent in real-world implementations and notable for their ease of data acquisition, have garnered considerable attention from both academic researchers and industry practitioners. The…

机器学习 · 计算机科学 2024-07-29 Xi Chen , Yun Xiong , Siwei Zhang , Jiawei Zhang , Yao Zhang , Shiyang Zhou , Xixi Wu , Mingyang Zhang , Tengfei Liu , Weiqiang Wang

Graph classification is an important learning task for graph-structured data. Graph neural networks (GNNs) have recently gained growing attention in graph learning and have shown significant improvements in many important graph problems.…

机器学习 · 计算机科学 2024-01-31 Tao Wen , Elynn Chen , Yuzhou Chen

Learning representations on large-sized graphs is a long-standing challenge due to the inter-dependence nature involved in massive data points. Transformers, as an emerging class of foundation encoders for graph-structured data, have shown…

机器学习 · 计算机科学 2024-08-19 Qitian Wu , Wentao Zhao , Chenxiao Yang , Hengrui Zhang , Fan Nie , Haitian Jiang , Yatao Bian , Junchi Yan

The Transformer architecture has gained growing attention in graph representation learning recently, as it naturally overcomes several limitations of graph neural networks (GNNs) by avoiding their strict structural inductive biases and…

机器学习 · 统计学 2022-06-14 Dexiong Chen , Leslie O'Bray , Karsten Borgwardt

Despite the success of Transformer models in vision and language tasks, they often learn knowledge from enormous data implicitly and cannot utilize structured input data directly. On the other hand, structured learning approaches such as…

计算机视觉与模式识别 · 计算机科学 2023-05-02 Xuehai He , Xin Eric Wang

Directed graphs are widely used to model asymmetric relationships in real-world systems. However, existing directed graph neural networks often struggle to jointly capture directional semantics and global structural patterns due to their…

机器学习 · 计算机科学 2025-08-20 Jiayu Fang , Zhiqi Shao , S T Boris Choy , Junbin Gao
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