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Predicting cellular responses to various perturbations is a critical focus in drug discovery and personalized therapeutics, with deep learning models playing a significant role in this endeavor. Single-cell datasets contain technical…

机器学习 · 计算机科学 2024-09-11 Seungheun Baek , Soyon Park , Yan Ting Chok , Junhyun Lee , Jueon Park , Mogan Gim , Jaewoo Kang

Single-cell perturbation modeling is fundamental for understanding and predicting cellular responses to genetic perturbations. However, existing approaches, from causal representation learning to foundation models, often struggle with an…

机器学习 · 计算机科学 2026-05-20 Wenkang Jiang , Yuhang Liu , Yichao Cai , Erdun Gao , Jiayi Dong , Ehsan Abbasnejad , Lina Yao , Javen Qinfeng Shi

Recent studies have demonstrated significant progress in aligning text-to-image diffusion models with human preference via Reinforcement Learning from Human Feedback. However, while existing methods achieve high scores on automated reward…

计算机视觉与模式识别 · 计算机科学 2026-03-11 Chubin Chen , Sujie Hu , Jiashu Zhu , Meiqi Wu , Jintao Chen , Yanxun Li , Nisha Huang , Chengyu Fang , Jiahong Wu , Xiangxiang Chu , Xiu Li

Model miscalibration has been frequently identified in modern deep neural networks. Recent work aims to improve model calibration directly through a differentiable calibration proxy. However, the calibration produced is often biased due to…

机器学习 · 计算机科学 2024-06-26 Cheng Wang , Jacek Golebiowski

We consider the problem of distributed estimation of an unknown deterministic scalar parameter (the target signal) in a wireless sensor network (WSN), where each sensor receives a single snapshot of the field. We assume that the observation…

信息论 · 计算机科学 2015-10-09 Qing Zhou , Di Li , Soummya Kar , Lauren Huie , H. Vincent Poor , Shuguang Cui

Calibration of neural networks is a topical problem that is becoming more and more important as neural networks increasingly underpin real-world applications. The problem is especially noticeable when using modern neural networks, for which…

机器学习 · 计算机科学 2023-08-29 Ondrej Bohdal , Yongxin Yang , Timothy Hospedales

The RNA-sequencing (RNA-seq) is becoming increasingly popular for quantifying gene expression levels. Since the RNA-seq measurements are relative in nature, between-sample normalization of counts is an essential step in differential…

统计方法学 · 统计学 2016-10-14 Kefei Liu , Jieping Ye , Yang Yang , Li Shen , Hui Jiang

The rapid adoption of synthetic data for training Large Language Models (LLMs) has introduced the technical challenge of "model collapse"-a degenerative process where recursive training on model-generated content leads to a contraction of…

机器学习 · 计算机科学 2026-03-24 Yi Gu , Lingyou Pang , Xiangkun Ye , Tianyu Wang , Jianyu Lin , Carey E. Priebe , Alexander Aue

We train a neural network to predict distributional responses in gene expression following genetic perturbations. This is an essential task in early-stage drug discovery, where such responses can offer insights into gene function and inform…

Loss explosions in training deep neural networks can nullify multi-million dollar training runs. Conventional monitoring metrics like weight and gradient norms are often lagging and ambiguous predictors, as their values vary dramatically…

机器学习 · 计算机科学 2025-10-07 Haiquan Qiu , You Wu , Yingjie Tan , Yaqing Wang , Quanming Yao

The adoption of deep learning across various fields has been extensive, yet there is a lack of focus on evaluating the performance of deep learning pipelines. Typically, with the increased use of large datasets and complex models, the…

机器学习 · 计算机科学 2024-05-21 Yewen Fan , Nian Si , Xiangchen Song , Kun Zhang

In this work, we observe a counterintuitive phenomenon in self-supervised learning (SSL): longer training may impair the performance of dense prediction tasks (e.g., semantic segmentation). We refer to this phenomenon as Self-supervised…

计算机视觉与模式识别 · 计算机科学 2025-10-21 Siran Dai , Qianqian Xu , Peisong Wen , Yang Liu , Qingming Huang

In safety-critical applications data-driven models must not only be accurate but also provide reliable uncertainty estimates. This property, commonly referred to as calibration, is essential for risk-aware decision-making. In regression a…

机器学习 · 计算机科学 2026-04-23 Jelke Wibbeke , Nico Schönfisch , Sebastian Rohjans , Andreas Rauh

Model diffing methods aim to identify how fine-tuning changes a model's internal representations. Crosscoders approach this by learning shared dictionaries of interpretable latent directions between base and fine-tuned models. However,…

机器学习 · 计算机科学 2026-03-06 Aly Kassem , Thomas Jiralerspong , Negar Rostamzadeh , Golnoosh Farnadi

By means of the concept of balanced estimation of diffusion entropy we evaluate reliable scale-invariance embedded in different sleep stages and stride records. Segments corresponding to Wake, light sleep, REM, and deep sleep stages are…

无序系统与神经网络 · 物理学 2012-11-14 Wenqing Zhang , Lu Qiu , Qin Xiao , Huijie Yang , Qingjun Zhang , Jianyong Wang

Imbalanced domain learning aims to produce accurate models in predicting instances that, though underrepresented, are of utmost importance for the domain. Research in this field has been mainly focused on classification tasks.…

机器学习 · 计算机科学 2022-08-17 Aníbal Silva , Rita P. Ribeiro , Nuno Moniz

Weight-perturbation evolution strategies (ES) can fine-tune billion-parameter language models with surprisingly small populations (e.g., $N\!\approx\!30$), contradicting classical zeroth-order curse-of-dimensionality intuition. We also…

机器学习 · 计算机科学 2026-02-03 Qiyao Liang , Jinyeop Song , Yizhou Liu , Jeff Gore , Ila Fiete , Risto Miikkulainen , Xin Qiu

Predicting high-dimensional transcriptional responses to genetic perturbations is challenging due to severe experimental noise and sparse gene-level effects. Existing methods often suffer from mean collapse, where high correlation is…

计算工程、金融与科学 · 计算机科学 2026-02-24 Yinhua Piao , Hyomin Kim , Seonghwan Kim , Yunhak Oh , Junhyeok Jeon , Sang-Yeon Hwang , Jaechang Lim , Woo Youn Kim , Chanyoung Park , Sungsoo Ahn

Recent studies identified an intriguing phenomenon in recursive generative model training known as model collapse, where models trained on data generated by previous models exhibit severe performance degradation. Addressing this issue and…

机器学习 · 统计学 2025-10-10 Hengzhi He , Shirong Xu , Guang Cheng

We investigate a failure mode that arises during the training of reasoning models, where the diversity of generations begins to collapse, leading to suboptimal test-time scaling. Notably, the Pass@1 rate reliably improves during supervised…

机器学习 · 计算机科学 2025-10-09 Xingyu Dang , Christina Baek , Kaiyue Wen , Zico Kolter , Aditi Raghunathan
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