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Spatial profiling technologies in biology, such as imaging mass cytometry (IMC) and spatial transcriptomics (ST), generate high-dimensional, multi-channel data with strong spatial alignment and complex inter-channel relationships.…

机器学习 · 计算机科学 2025-07-08 Haoran Zhang , Mingyuan Zhou , Wesley Tansey

The problem of unsupervised learning and segmentation of hyperspectral images is a significant challenge in remote sensing. The high dimensionality of hyperspectral data, presence of substantial noise, and overlap of classes all contribute…

计算机视觉与模式识别 · 计算机科学 2018-10-17 James M. Murphy , Mauro Maggioni

Diffusion-based image super-resolution (SR) methods have demonstrated remarkable performance. Recent advancements have introduced deterministic sampling processes that reduce inference from 15 iterative steps to a single step, thereby…

计算机视觉与模式识别 · 计算机科学 2025-05-13 Zihang Liu , Zhenyu Zhang , Hao Tang

Conditional diffusion probabilistic models can model the distribution of natural images and can generate diverse and realistic samples based on given conditions. However, oftentimes their results can be unrealistic with observable color…

计算机视觉与模式识别 · 计算机科学 2022-12-15 Kangfu Mei , Nithin Gopalakrishnan Nair , Vishal M. Patel

While conditional diffusion models are known to have good coverage of the data distribution, they still face limitations in output diversity, particularly when sampled with a high classifier-free guidance scale for optimal image quality or…

计算机视觉与模式识别 · 计算机科学 2024-05-14 Seyedmorteza Sadat , Jakob Buhmann , Derek Bradley , Otmar Hilliges , Romann M. Weber

Diffusion models have emerged as powerful tools for generative tasks, producing high-quality outputs across diverse domains. However, how the generated data responds to the initial noise perturbation in diffusion models remains…

机器学习 · 计算机科学 2025-02-10 Bowen Song , Zecheng Zhang , Zhaoxu Luo , Jason Hu , Wei Yuan , Jing Jia , Zhengxu Tang , Guanyang Wang , Liyue Shen

Masked discrete diffusion is a dominant paradigm for high-quality language modeling where tokens are iteratively corrupted to a mask state, yet its inference efficiency is bottlenecked by the lack of deterministic sampling tools. While…

机器学习 · 计算机科学 2026-02-03 Guinan Chen , Xunpeng Huang , Ying Sun , Shijin Wang , Yanyong Zhang , Chao Wang

Self-conditioning has been central to the success of continuous diffusion language models, as it allows models to correct previous errors. Yet its ability degrades precisely in the regime where diffusion is most attractive for deployment:…

计算与语言 · 计算机科学 2026-04-08 Dat Nguyen-Cong , Tung Kieu , Hoang Thanh-Tung

Single-cell RNA sequencing (scRNA-seq) enables the study of cellular heterogeneity. Yet, clustering accuracy, and with it downstream analyses based on cell labels, remain challenging due to measurement noise and biological variability. In…

机器学习 · 计算机科学 2026-03-03 Dominik Meier , Shixing Yu , Sagnik Nandy , Promit Ghosal , Kyra Gan

We present a novel approach designed to address the complexities posed by challenging, out-of-distribution data in the single-image depth estimation task. Starting with images that facilitate depth prediction due to the absence of…

计算机视觉与模式识别 · 计算机科学 2024-07-24 Fabio Tosi , Pierluigi Zama Ramirez , Matteo Poggi

Learning to sample from complex unnormalized distributions over discrete domains emerged as a promising research direction with applications in statistical physics, variational inference, and combinatorial optimization. Recent work has…

Cellular response to a perturbation is the result of a dynamic system of biological variables linked in a complex network. A major challenge in drug and disease studies is identifying the key factors of a biological network that are…

应用统计 · 统计学 2014-09-02 Lisa M. Pham , Luis Carvalho , Scott Schaus , Eric D. Kolaczyk

In high-dimensional linear models, the sparsity assumption is typically made, stating that most of the parameters are equal to zero. Under the sparsity assumption, estimation and, recently, inference have been well studied. However, in…

统计方法学 · 统计学 2019-07-09 Yinchu Zhu , Jelena Bradic

Automated semantic segmentation of cell nuclei in microscopic images is crucial for disease diagnosis and tissue microenvironment analysis. Nonetheless, this task presents challenges due to the complexity and heterogeneity of cells. While…

图像与视频处理 · 电气工程与系统科学 2023-08-10 Zhuchen Shao , Sourya Sengupta , Hua Li , Mark A. Anastasio

Single-cell data provide high-dimensional measurements of the transcriptional states of cells, but extracting insights into the regulatory functions of genes, particularly identifying transcriptional mechanisms affected by biological…

This paper introduces the Single-Cell Perturbation Prediction Diffusion Model (scPPDM), the first diffusion-based framework for single-cell drug-response prediction from scRNA-seq data. scPPDM couples two condition channels,…

定量方法 · 定量生物学 2025-10-15 Zhaokang Liang , Shuyang Zhuang , Xiaoran Jiao , Weian Mao , Hao Chen , Chunhua Shen

Physical fields are typically observed only at sparse, time-varying sensor locations, making forecasting and reconstruction ill-posed and uncertainty-critical. We present SOLID, a mask-conditioned diffusion framework that learns…

机器学习 · 计算机科学 2026-03-06 Kevin Valencia , Xihaier Luo , Shinjae Yoo , David Keetae Park

Conditional diffusion models have achieved remarkable success in various generative tasks recently, but their training typically relies on large-scale datasets that inevitably contain imprecise information in conditional inputs. Such…

机器学习 · 计算机科学 2025-10-13 Dong-Dong Wu , Jiacheng Cui , Wei Wang , Zhiqiang Shen , Masashi Sugiyama

We consider the inference problem for parameters in stochastic differential equation models from discrete time observations (e.g. experimental or simulation data). Specifically, we study the case where one does not have access to…

数值分析 · 数学 2018-04-10 Sebastian Krumscheid

Diffusion-based approaches have recently demonstrated strong performance for single-image novel view synthesis by conditioning generative models on geometry inferred from monocular depth estimation. However, in practice, the quality and…

计算机视觉与模式识别 · 计算机科学 2026-04-20 Amirhosein Javadi , Chi-Shiang Gau , Konstantinos D. Polyzos , Tara Javidi