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In this paper, we present our approach to extracting structured information from unstructured Electronic Health Records (EHR) [2] which can be used to, for example, study adverse drug reactions in patients due to chemicals in their…

计算与语言 · 计算机科学 2020-01-30 Amogh Kamat Tarcar , Aashis Tiwari , Vineet Naique Dhaimodker , Penjo Rebelo , Rahul Desai , Dattaraj Rao

The advent of large language models (LLMs) has opened new avenues for analyzing complex, unstructured data, particularly within the medical domain. Electronic Health Records (EHRs) contain a wealth of information in various formats,…

信息检索 · 计算机科学 2025-06-10 Wu Hao Ran , Xi Xi , Furong Li , Jingyi Lu , Jian Jiang , Hui Huang , Yuzhuan Zhang , Shi Li

Health systems are rapidly deploying large language models (LLMs) that use clinical notes for clinical decision support applications. However, modern documentation practices rely heavily on templates, copy--paste shortcuts, and…

With the advent of large language models (LLMs), the vast unstructured text within millions of academic papers is increasingly accessible for materials discovery, although significant challenges remain. While LLMs offer promising few- and…

计算与语言 · 计算机科学 2025-09-30 Amit K Verma , Zhisong Zhang , Junwon Seo , Robin Kuo , Runbo Jiang , Emma Strubell , Anthony D Rollett

Clinical notes contain an extensive record of a patient's health status, such as smoking status or the presence of heart conditions. However, this detail is not replicated within the structured data of electronic health systems.…

计算与语言 · 计算机科学 2020-09-18 Andriy Mulyar , Elliot Schumacher , Masoud Rouhizadeh , Mark Dredze

Current LLMs for creating fully-structured reports face the challenges of formatting errors, content hallucinations, and privacy leakage issues when uploading data to external servers.We aim to develop an open-source, accurate LLM for…

Integrating novel medical concepts and relationships into existing ontologies can significantly enhance their coverage and utility for both biomedical research and clinical applications. Clinical notes, as unstructured documents rich with…

人工智能 · 计算机科学 2025-11-21 Guanchen Wu , Yuzhang Xie , Huanwei Wu , Zhe He , Hui Shao , Xiao Hu , Carl Yang

Large Language Models (LLMs) have become a key topic in AI and NLP, transforming sectors like healthcare, finance, education, and marketing by improving customer service, automating tasks, providing insights, improving diagnostics, and…

人工智能 · 计算机科学 2025-12-05 Vignesh Kumar Kembu , Pierandrea Morandini , Marta Bianca Maria Ranzini , Antonino Nocera

Large pre-trained language models (LMs) have been widely adopted in biomedical and clinical domains, introducing many powerful LMs such as bio-lm and BioELECTRA. However, the applicability of these methods to real clinical use cases is…

计算与语言 · 计算机科学 2022-11-16 Samuel Cahyawijaya , Bryan Wilie , Holy Lovenia , Huan Zhong , MingQian Zhong , Yuk-Yu Nancy Ip , Pascale Fung

Crucial information about the practice of healthcare is recorded only in free-form text, which creates an enormous opportunity for high-impact NLP. However, annotated healthcare datasets tend to be small and expensive to obtain, which…

计算与语言 · 计算机科学 2019-04-09 Yifeng Tao , Bruno Godefroy , Guillaume Genthial , Christopher Potts

Structured data offers a sophisticated mechanism for the organization of information. Existing methodologies for the text-serialization of structured data in the context of large language models fail to adequately address the heterogeneity…

计算与语言 · 计算机科学 2024-02-20 YiQiu Guo , Yuchen Yang , Ya Zhang , Yu Wang , Yanfeng Wang

Assisting pathologists in the analysis of histopathological images has high clinical value, as it supports cancer detection and staging. In this context, histology foundation models have recently emerged. Among them, Vision-Language Models…

计算机视觉与模式识别 · 计算机科学 2026-01-21 Tiffanie Godelaine , Maxime Zanella , Karim El Khoury , Saïd Mahmoudi , Benoît Macq , Christophe De Vleeschouwer

Automatic structuring of electronic medical records is of high demand for clinical workflow solutions to facilitate extraction, storage, and querying of patient care information. However, developing a scalable solution is extremely…

计算与语言 · 计算机科学 2020-10-13 Morteza Pourreza Shahri , Amir Tahmasebi , Bingyang Ye , Henghui Zhu , Javed Aslam , Timothy Ferris

This study evaluates the capacity of large language models (LLMs) to generate structured clinical consultation templates for electronic consultation. Using 145 expert-crafted templates developed and routinely used by Stanford's eConsult…

Existing Clinical Decision Support Systems (CDSSs) largely depend on the availability of structured patient data and Electronic Health Records (EHRs) to aid caregivers. However, in case of hospitals in developing countries, structured…

计算与语言 · 计算机科学 2019-11-27 Gokul S Krishnan , Sowmya Kamath S

Manual digitisation of structured handwritten documents is slow and costly. We benchmark 17 leading frontier multi-modal large language models and open-source models against a very challenging real-world medical form that mixes dates;…

计算机视觉与模式识别 · 计算机科学 2026-04-21 Nicholas Pather , Joshua Fouché , Sitwala Mundia , Karl-Günter Technau , Thokozile Malaba , Alex Welte , Ushma Mehta , Bruce A. Bassett

Physician burnout in the United States has reached critical levels, driven in part by the administrative burden of Electronic Health Record (EHR) documentation and complex diagnostic codes. To relieve this strain and maintain strict patient…

信息检索 · 计算机科学 2026-03-25 Peter Hartnett , Chung-Chi Huang , Sarah Hartnett , David Hartnett

To overcome the limitations of manual administrative coding in geriatric Cardiovascular Risk Management, this study introduces an automated classification framework leveraging unstructured Electronic Health Records (EHRs). Using a dataset…

A long-running goal of the clinical NLP community is the extraction of important variables trapped in clinical notes. However, roadblocks have included dataset shift from the general domain and a lack of public clinical corpora and…

计算与语言 · 计算机科学 2022-12-01 Monica Agrawal , Stefan Hegselmann , Hunter Lang , Yoon Kim , David Sontag

There is an unmet need to evaluate the language difficulty of short, conversational passages of text, particularly for training and filtering Large Language Models (LLMs). We introduce Ace-CEFR, a dataset of English conversational text…

计算与语言 · 计算机科学 2025-06-18 David Kogan , Max Schumacher , Sam Nguyen , Masanori Suzuki , Melissa Smith , Chloe Sophia Bellows , Jared Bernstein