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Repetitive DNA (repeats) poses significant challenges for accurate and efficient genome assembly and sequence alignment. This is particularly true for metagenomic data, where genome dynamics such as horizontal gene transfer, gene…

机器学习 · 计算机科学 2024-02-15 Ali Azizpour , Advait Balaji , Todd J. Treangen , Santiago Segarra

Graph Neural Networks (GNNs) have evolved to understand graph structures through recursive exchanges and aggregations among nodes. To enhance robustness, self-supervised learning (SSL) has become a vital tool for data augmentation.…

计算与语言 · 计算机科学 2024-05-08 Jiabin Tang , Yuhao Yang , Wei Wei , Lei Shi , Lixin Su , Suqi Cheng , Dawei Yin , Chao Huang

While a growing body of literature has been studying new Graph Neural Networks (GNNs) that work on both homophilic and heterophilic graphs, little has been done on adapting classical GNNs to less-homophilic graphs. Although the ability to…

机器学习 · 计算机科学 2024-04-30 Shouheng Li , Dongwoo Kim , Qing Wang

Graph Neural Networks (GNNs) have emerged as a promising tool to handle data exhibiting an irregular structure. However, most GNN architectures perform well on homophilic datasets, where the labels of neighboring nodes are likely to be the…

机器学习 · 计算机科学 2024-12-03 Victor M. Tenorio , Madeline Navarro , Samuel Rey , Santiago Segarra , Antonio G. Marques

Inferring missing links or detecting spurious ones based on observed graphs, known as link prediction, is a long-standing challenge in graph data analysis. With the recent advances in deep learning, graph neural networks have been used for…

社会与信息网络 · 计算机科学 2023-01-03 Xingping Xian , Tao Wu , Xiaoke Ma , Shaojie Qiao , Yabin Shao , Chao Wang , Lin Yuan , Yu Wu

Graph Contrastive Learning (GCL) has shown superior performance in representation learning in graph-structured data. Despite their success, most existing GCL methods rely on prefabricated graph augmentation and homophily assumptions. Thus,…

机器学习 · 计算机科学 2024-02-27 Teng Xiao , Huaisheng Zhu , Zhengyu Chen , Suhang Wang

Deep graph embedding is an important approach for community discovery. Deep graph neural network with self-supervised mechanism can obtain the low-dimensional embedding vectors of nodes from unlabeled and unstructured graph data. The…

社会与信息网络 · 计算机科学 2021-02-09 Shuliang Xu , Shenglan Liu , Lin Feng

Heterogeneous graph neural networks can represent information of heterogeneous graphs with excellent ability. Recently, self-supervised learning manner is researched which learns the unique expression of a graph through a contrastive…

机器学习 · 计算机科学 2022-01-12 Minjae Park

Recent research has witnessed the remarkable progress of Graph Neural Networks (GNNs) in the realm of graph data representation. However, GNNs still encounter the challenge of structural imbalance. Prior solutions to this problem did not…

机器学习 · 计算机科学 2025-04-25 Ke-Jia Chen , Wenhui Mu , Zheng Liu

Community detection has long been an important yet challenging task to analyze complex networks with a focus on detecting topological structures of graph data. Essentially, real-world graph data contains various features, node and edge…

机器学习 · 计算机科学 2020-03-16 Yaping Zheng , Shiyi Chen , Xinni Zhang , Xiaofeng Zhang , Xiaofei Yang , Di Wang

Over the past decade, the Cyberspace has seen an increasing number of attacks coming from botnets using the Peer-to-Peer (P2P) architecture. Peer-to-Peer botnets use a decentralized Command & Control architecture. Moreover, a large number…

网络与互联网体系结构 · 计算机科学 2013-07-30 Sharath Chandra Guntuku , Pratik Narang , Chittaranjan Hota

In this paper, we develop a novel local graph pooling method, namely the Separated Subgraph-based Hierarchical Pooling (SSHPool), for graph classification. We commence by assigning the nodes of a sample graph into different clusters,…

人工智能 · 计算机科学 2024-08-14 Zhuo Xu , Lixin Cui , Ming Li , Yue Wang , Ziyu Lyu , Hangyuan Du , Lu Bai , Philip S. Yu , Edwin R. Hancock

Recognizing multiple labels of images is a practical and challenging task, and significant progress has been made by searching semantic-aware regions and modeling label dependency. However, current methods cannot locate the semantic regions…

计算机视觉与模式识别 · 计算机科学 2019-08-21 Tianshui Chen , Muxin Xu , Xiaolu Hui , Hefeng Wu , Liang Lin

With the frequent happening of privacy leakage and the enactment of privacy laws across different countries, data owners are reluctant to directly share their raw data and labels with any other party. In reality, a lot of these raw data are…

机器学习 · 计算机科学 2023-01-31 Xiaolong Xu , Lingjuan Lyu , Yihong Dong , Yicheng Lu , Weiqiang Wang , Hong Jin

Hypergraph Neural Networks (HyGNNs) have demonstrated remarkable success in modeling higher-order relationships among entities. However, their performance often degrades on heterophilic hypergraphs, where nodes connected by the same…

机器学习 · 计算机科学 2026-02-17 Tianyi Ma , Yiyue Qian , Zehong Wang , Zheyuan Zhang , Chuxu Zhang , Yanfang Ye

Learning the right graph representation from noisy, multisource data has garnered significant interest in recent years. A central tenet of this problem is relational learning. Here the objective is to incorporate the partial information…

机器学习 · 计算机科学 2014-01-15 Rajmonda Caceres , Kevin Carter , Jeremy Kun

Graph anomaly detection technology has broad applications in financial fraud and risk control. However, existing graph anomaly detection methods often face significant challenges when dealing with complex and variable abnormal patterns, as…

机器学习 · 计算机科学 2025-12-30 Qingyue Cao , Bo Jin , Changwei Gong , Xin Tong , Wenzheng Li , Xiaodong Zhou

Graph Neural Networks (GNNs) have achieved great success in modeling graph-structured data. However, recent works show that GNNs are vulnerable to adversarial attacks which can fool the GNN model to make desired predictions of the attacker.…

机器学习 · 计算机科学 2023-06-16 Enyan Dai , Limeng Cui , Zhengyang Wang , Xianfeng Tang , Yinghan Wang , Monica Cheng , Bing Yin , Suhang Wang

Graph contrastive learning (GCL) has emerged as a promising approach to enhance graph neural networks' (GNNs) ability to learn rich representations from unlabeled graph-structured data. However, current GCL models face challenges with…

机器学习 · 计算机科学 2025-03-11 Yujia Wu , Junyi Mo , Elynn Chen , Yuzhou Chen

Graph neural network (GNN) has gained increasing popularity in recent years owing to its capability and flexibility in modeling complex graph structure data. Among all graph learning methods, hypergraph learning is a technique for exploring…

机器学习 · 计算机科学 2024-12-31 Tiehua Zhang , Yuze Liu , Zhishu Shen , Xingjun Ma , Peng Qi , Zhijun Ding , Jiong Jin