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Examining Drug-Drug Interactions (DDIs) is a pivotal element in the process of drug development. DDIs occur when one drug's properties are affected by the inclusion of other drugs. Detecting favorable DDIs has the potential to pave the way…

机器学习 · 计算机科学 2026-03-20 Azmine Toushik Wasi , Taki Hasan Rafi , Raima Islam , Serbetar Karlo , Dong-Kyu Chae

We present a two-step hybrid reinforcement learning (RL) policy that is designed to generate interpretable and robust hierarchical policies on the RL problem with graph-based input. Unlike prior deep reinforcement learning policies…

机器学习 · 计算机科学 2022-10-20 Tongzhou Mu , Kaixiang Lin , Feiyang Niu , Govind Thattai

In structure-based drug design, accurately estimating the binding affinity between a candidate ligand and its protein receptor is a central challenge. Recent advances in artificial intelligence, particularly deep learning, have demonstrated…

生物大分子 · 定量生物学 2025-09-18 Md Masud Rana , Farjana Tasnim Mukta , Duc D. Nguyen

We focus on the extension of bivariate causal learning methods into multivariate problem settings in a systematic manner via a novel framework. It is purposive to augment the scale to which bivariate causal discovery approaches can be…

统计方法学 · 统计学 2023-05-29 Hongyi Chen , Maurits Kaptein

Retrosynthetic planning, which aims to find a reaction pathway to synthesize a target molecule, plays an important role in chemistry and drug discovery. This task is usually modeled as a search problem. Recently, data-driven methods have…

人工智能 · 计算机科学 2022-06-24 Shufang Xie , Rui Yan , Peng Han , Yingce Xia , Lijun Wu , Chenjuan Guo , Bin Yang , Tao Qin

Irregular Medical Time Series play a critical role in the clinical domain to better understand the patient's condition. However, inherent irregularity arising from heterogeneous sampling rates, asynchronous observations, and variable gaps…

机器学习 · 计算机科学 2026-04-15 Jian Chen , Yuzhu Hu , Xiaoyan Yuan , Yuxuan Hu , Jinfeng Xu , Yipeng Du , Wenhao Yuan , Wei Wang , Edith C. H. Ngai

Recent disentangled representation learning (DRL) methods heavily rely on factor specific strategies-either learning objectives for attributes or model architectures for objects-to embed inductive biases. Such divergent approaches result in…

机器学习 · 计算机科学 2025-11-12 Whie Jung , Dong Hoon Lee , Seunghoon Hong

Deep learning-based approaches for generating novel drug molecules with specific properties have gained a lot of interest in the last few years. Recent studies have demonstrated promising performance for string-based generation of novel…

生物大分子 · 定量生物学 2025-02-18 Hampus Gummesson Svensson , Christian Tyrchan , Ola Engkvist , Morteza Haghir Chehreghani

Reinforcement learning (RL) has the potential to significantly improve clinical decision making. However, treatment policies learned via RL from observational data are sensitive to subtle choices in study design. We highlight a simple…

机器学习 · 计算机科学 2020-12-23 Christina X. Ji , Michael Oberst , Sanjat Kanjilal , David Sontag

Graph neural networks (GNNs), as topology/structure-aware models within deep learning, have emerged as powerful tools for AI-aided drug discovery (AIDD). By directly operating on molecular graphs, GNNs offer an intuitive and expressive…

Predicting interactions among heterogenous graph structured data has numerous applications such as knowledge graph completion, recommendation systems and drug discovery. Often times, the links to be predicted belong to rare types such as…

机器学习 · 计算机科学 2020-07-21 Vassilis N. Ioannidis , Da Zheng , George Karypis

Molecular editing aims to modify a given molecule to optimize desired chemical properties while preserving structural similarity. However, current approaches typically rely on string-based or continuous representations, which fail to…

机器学习 · 计算机科学 2025-05-27 Yuanxin Zhuang , Dazhong Shen , Ying Sun

Recent advances in offline Reinforcement Learning (RL) have proven that effective policy learning can benefit from imposing conservative constraints on pre-collected datasets. However, such static datasets often exhibit distribution bias,…

机器学习 · 计算机科学 2026-05-15 Yunpeng Qing , Yixiao Chi , Shuo Chen , Shunyu Liu , Kexuan Zhou , Sixu Lin , Litao Liu , Changqing Zou

Prediction of new drug-target interactions is extremely important as it can lead the researchers to find new uses for old drugs and to realize the therapeutic profiles or side effects thereof. However, experimental prediction of drug-target…

计算工程、金融与科学 · 计算机科学 2017-07-05 Farshid Rayhan , Sajid Ahmed , Swakkhar Shatabda , Dewan Md Farid , Zaynab Mousavian , Abdollah Dehzangi , M Sohel Rahman

We propose a novel approach for learning node representations in directed graphs, which maintains separate views or embedding spaces for the two distinct node roles induced by the directionality of the edges. We argue that the previous…

社会与信息网络 · 计算机科学 2019-07-01 Megha Khosla , Jurek Leonhardt , Wolfgang Nejdl , Avishek Anand

Human brain and behavior provide a rich venue that can inspire novel control and learning methods for robotics. In an attempt to exemplify such a development by inspiring how humans acquire knowledge and transfer skills among tasks, we…

机器人学 · 计算机科学 2025-01-10 Suzan Ece Ada , Hanne Say , Emre Ugur , Erhan Oztop

Label distribution learning (LDL) is an interpretable and general learning paradigm that has been applied in many real-world applications. In contrast to the simple logical vector in single-label learning (SLL) and multi-label learning…

机器学习 · 计算机科学 2020-07-08 Xinyuan Liu , Jihua Zhu , Qinghai Zheng , Zhongyu Li , Ruixin Liu , Jun Wang

Biomedical information graphs are crucial for interaction discovering of biomedical information in modern age, such as identification of multifarious molecular interactions and drug discovery, which attracts increasing interests in…

机器学习 · 计算机科学 2024-02-20 Zecheng Yin

Dual-target therapeutic strategies have become a compelling approach and attracted significant attention due to various benefits, such as their potential in overcoming drug resistance in cancer therapy. Considering the tremendous success…

机器学习 · 计算机科学 2024-11-27 Xiangxin Zhou , Jiaqi Guan , Yijia Zhang , Xingang Peng , Liang Wang , Jianzhu Ma

Graph Neural Networks (GNNs) have gained traction in the complex domain of drug discovery because of their ability to process graph-structured data such as drug molecule models. This approach has resulted in a myriad of methods and models…

机器学习 · 计算机科学 2025-09-10 Katherine Berry , Liang Cheng