中文
相关论文

相关论文: Leveraging Large Language Models for enzymatic rea…

200 篇论文

Research on long non-coding RNAs (lncRNAs) has garnered significant attention due to their critical roles in gene regulation and disease mechanisms. However, the complexity and diversity of lncRNA sequences, along with the limited knowledge…

基因组学 · 定量生物学 2024-11-07 Wei Wang , Zhichao Hou , Xiaorui Liu , Xinxia Peng

Large language models (LLMs) are powerful artificial intelligence (AI) tools transforming how research is conducted. However, their use in research has been met with skepticism, due to concerns about hallucinations, biases and potential…

人工智能 · 计算机科学 2025-07-08 Ruian Ke , Ruy M. Ribeiro

The rapid advancement of Large Language Models (LLMs) has led to a multitude of application opportunities. One traditional task for Information Retrieval systems is the summarization and classification of texts, both of which are important…

计算与语言 · 计算机科学 2025-02-25 Gautam Kishore Shahi , Oliver Hummel

Traditional machine learning models struggle to generalize in microbiome studies where only metadata is available, especially in small-sample settings or across studies with heterogeneous label formats. In this work, we explore the use of…

计算与语言 · 计算机科学 2025-07-30 Hyunwoo Yoo , Gail L. Rosen

This study analyzes the multiple functions of Large Language Models (LLMs) in transforming research and development (R&D) processes. By automating knowledge discovery, boosting hypothesis creation, integrating transdisciplinary insights,…

计算与语言 · 计算机科学 2025-11-25 Raha Aghaei , Ali A. Kiaei , Mahnaz Boush , Mahan Rofoosheh , Mohammad Zavvar

Large Language Models (LLMs) have demonstrated remarkable adaptability, showcasing their capacity to excel in tasks for which they were not explicitly trained. However, despite their impressive natural language processing (NLP)…

计算与语言 · 计算机科学 2023-09-08 Supun Manathunga , Isuru Hettigoda

With extensive pre-trained knowledge and high-level general capabilities, large language models (LLMs) emerge as a promising avenue to augment reinforcement learning (RL) in aspects such as multi-task learning, sample efficiency, and…

机器学习 · 计算机科学 2024-11-21 Yuji Cao , Huan Zhao , Yuheng Cheng , Ting Shu , Yue Chen , Guolong Liu , Gaoqi Liang , Junhua Zhao , Jinyue Yan , Yun Li

Recent advances in Protein Language Models (PLMs) have transformed protein engineering, yet unlike their counterparts in Natural Language Processing (NLP), current PLMs exhibit a fundamental limitation: they excel in either Protein Language…

计算工程、金融与科学 · 计算机科学 2025-09-16 Liuzhenghao Lv , Zongying Lin , Hao Li , Yuyang Liu , Jiaxi Cui , Calvin Yu-Chian Chen , Li Yuan , Yonghong Tian

Developers deal with code-change-related tasks daily, e.g., reviewing code. Pre-trained code and code-change-oriented models have been adapted to help developers with such tasks. Recently, large language models (LLMs) have shown their…

软件工程 · 计算机科学 2024-07-04 Lishui Fan , Jiakun Liu , Zhongxin Liu , David Lo , Xin Xia , Shanping Li

Molecular dynamics (MD) is a powerful approach for modelling molecular systems, but it remains computationally intensive on spatial and time scales of many macromolecular systems of biological interest. To explore the opportunities offered…

生物大分子 · 定量生物学 2025-08-07 Mhd Hussein Murtada , Z. Faidon Brotzakis , Michele Vendruscolo

Large language models (LLMs) have demonstrated immense capabilities in understanding textual data and are increasingly being adopted to help researchers accelerate scientific discovery through knowledge extraction (information retrieval),…

计算机视觉与模式识别 · 计算机科学 2025-05-30 Robinson Umeike , Neil Getty , Fangfang Xia , Rick Stevens

In education, the capability of generating human-like text of Large Language Models (LLMs) inspired work on how they can increase the efficiency of learning and teaching. We study the affordability of these models for educators and students…

计算与语言 · 计算机科学 2025-03-06 Bianca Raimondi , Saverio Giallorenzo , Maurizio Gabbrielli

We present a modular framework powered by large language models (LLMs) that automates and streamlines key tasks across the early-stage computational drug discovery pipeline. By combining LLM reasoning with domain-specific tools, the…

The advancement of Large Language Models (LLMs) has significantly impacted biomedical Natural Language Processing (NLP), enhancing tasks such as named entity recognition, relation extraction, event extraction, and text classification. In…

计算与语言 · 计算机科学 2025-03-04 Zaifu Zhan , Shuang Zhou , Huixue Zhou , Jiawen Deng , Yu Hou , Jeremy Yeung , Rui Zhang

We investigate the predictability of large language model (LLM) capabilities: given records of past experiments using different model families, numbers of parameters, tasks, and numbers of in-context examples, can we accurately predict LLM…

计算与语言 · 计算机科学 2023-11-01 Qinyuan Ye , Harvey Yiyun Fu , Xiang Ren , Robin Jia

Large Language Models (LLMs) have become a cornerstone in Natural Language Processing (NLP), achieving impressive performance in text generation. Their token-level representations capture rich, human-aligned semantics. However, pooling…

计算与语言 · 计算机科学 2025-09-25 Benedikt Roth , Stephan Rappensperger , Tianming Qiu , Hamza Imamović , Julian Wörmann , Hao Shen

In the domain of data science, the predictive tasks of classification, regression, and imputation of missing values are commonly encountered challenges associated with tabular data. This research endeavors to apply Large Language Models…

机器学习 · 计算机科学 2026-04-23 Yazheng Yang , Yuqi Wang , Yaxuan Li , Sankalok Sen , Lei Li , Lin Qiu , Qi Liu

Large Language Models (LLMs) are known for their expensive and time-consuming training. Thus, oftentimes, LLMs are fine-tuned to address a specific task, given the pretrained weights of a pre-trained LLM considered a foundation model. In…

计算与语言 · 计算机科学 2025-12-05 Eshed Gal , Moshe Eliasof , Javier Turek , Uri Ascher , Eran Treister , Eldad Haber

We present a systematic study of medical-domain interpretability in Large Language Models (LLMs). We study how the LLMs both represent and process medical knowledge through four different interpretability techniques: (1) UMAP projections of…

机器学习 · 计算机科学 2026-02-24 Razvan Marinescu , Victoria-Elisabeth Gruber , Diego Fajardo

Recently, large language models (LLMs) have expanded into various domains. However, there remains a need to evaluate how these models perform when prompted with commonplace queries compared to domain-specific queries, which may be useful…

计算与语言 · 计算机科学 2024-08-22 Oluyemi Enoch Amujo , Shanchieh Jay Yang