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As more deep learning models are being applied in real-world applications, there is a growing need for modeling and learning the representations of neural networks themselves. An efficient representation can be used to predict target…

机器学习 · 计算机科学 2023-10-17 Yun Yi , Haokui Zhang , Rong Xiao , Nannan Wang , Xiaoyu Wang

We introduce a self-supervised speech pre-training method called TERA, which stands for Transformer Encoder Representations from Alteration. Recent approaches often learn by using a single auxiliary task like contrastive prediction,…

音频与语音处理 · 电气工程与系统科学 2021-08-05 Andy T. Liu , Shang-Wen Li , Hung-yi Lee

Asking clarifying questions in response to ambiguous or faceted queries has been recognized as a useful technique for various information retrieval systems, especially conversational search systems with limited bandwidth interfaces.…

信息检索 · 计算机科学 2020-06-16 Helia Hashemi , Hamed Zamani , W. Bruce Croft

Treatment effect estimation, which refers to the estimation of causal effects and aims to measure the strength of the causal relationship, is of great importance in many fields but is a challenging problem in practice. As present,…

机器学习 · 计算机科学 2021-07-20 Zhenyu Guo , Shuai Zheng , Zhizhe Liu , Kun Yan , Zhenfeng Zhu

Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw genome sequences, gene finding is an important avenue towards…

基因组学 · 定量生物学 2025-05-07 Frederikke I. Marin , Dennis Pultz , Wouter Boomsma

Pre-trained transformer models shine in many natural language processing tasks and therefore are expected to bear the representation of the input sentence or text meaning. These sentence-level embeddings are also important in…

计算与语言 · 计算机科学 2025-02-21 Lukas Stankevičius , Mantas Lukoševičius

Symbolic regression is the task of identifying a mathematical expression that best fits a provided dataset of input and output values. Due to the richness of the space of mathematical expressions, symbolic regression is generally a…

机器学习 · 计算机科学 2021-06-29 Mojtaba Valipour , Bowen You , Maysum Panju , Ali Ghodsi

Self-supervised speech representation learning has shown promising results in various speech processing tasks. However, the pre-trained models, e.g., HuBERT, are storage-intensive Transformers, limiting their scope of applications under…

音频与语音处理 · 电气工程与系统科学 2022-06-22 Rui Wang , Qibing Bai , Junyi Ao , Long Zhou , Zhixiang Xiong , Zhihua Wei , Yu Zhang , Tom Ko , Haizhou Li

Single-cell RNA sequencing (scRNA-seq) enables single-cell transcriptomic profiling, revealing cellular heterogeneity and rare populations. Recent deep learning models like Geneformer and Mouse-Geneformer perform well on tasks such as…

基因组学 · 定量生物学 2025-07-11 Yuki Nishio , Takayoshi Yamashita , Keita Ito , Tsubasa Hirakawa , Hironobu Fujiyoshi

Transfer learning is beneficial for survival analysis, especially when the target study has a limited number of events. However, existing transfer learning methods rely on the restrictive assumption that the target and source studies share…

统计方法学 · 统计学 2026-03-13 Yu Gu , Donglin Zeng , D. Y. Lin

Understanding the molecular processes that drive cellular life is a fundamental question in biological research. Ambitious programs have gathered a number of molecular datasets on large populations. To decipher the complex cellular…

基因组学 · 定量生物学 2023-03-22 Myriam Bontonou , Anaïs Haget , Maria Boulougouri , Jean-Michel Arbona , Benjamin Audit , Pierre Borgnat

In recent years, molecular representation learning has emerged as a key area of focus in various chemical tasks. However, many existing models fail to fully consider the geometric information of molecular structures, resulting in less…

机器学习 · 计算机科学 2023-06-29 Bumju Kwak , Jiwon Park , Taewon Kang , Jeonghee Jo , Byunghan Lee , Sungroh Yoon

In recent years BERT shows apparent advantages and great potential in natural language processing tasks. However, both training and applying BERT requires intensive time and resources for computing contextual language representations, which…

计算与语言 · 计算机科学 2021-11-05 Tan Huang

We propose a novel transfer learning method for speech emotion recognition allowing us to obtain promising results when only few training data is available. With as low as 125 examples per emotion class, we were able to reach a higher…

机器学习 · 计算机科学 2020-11-12 Jonathan Boigne , Biman Liyanage , Ted Östrem

Self-supervised learning has shown great success in Speech Recognition. However, it has been observed that finetuning all layers of the learned model leads to lower performance compared to resetting top layers. This phenomenon is attributed…

计算与语言 · 计算机科学 2024-05-15 Valentin Vielzeuf

We propose a novel deep neural network architecture to learn interpretable representation for medical image analysis. Our architecture generates a global attention for region of interest, and then learns bag of words style deep feature…

计算机视觉与模式识别 · 计算机科学 2022-11-10 Soumen Basu , Mayank Gupta , Pratyaksha Rana , Pankaj Gupta , Chetan Arora

[18F]FDG-PET/CT is a cornerstone imaging modality for tumor staging and treatment response assessment across many cancer types, yet expert reader shortages necessitate more efficient diagnostic aids. While standalone AI models for automatic…

Explaining deep neural network predictions on genome sequences enables biological insight and hypothesis generation-often of greater interest than predictive performance alone. While explanations of convolutional neural networks (CNNs) have…

机器学习 · 计算机科学 2026-04-24 Isabel Kurth , Paulo Yanez Sarmiento , Bernhard Y. Renard

Transfer learning is an important approach for addressing the challenges posed by limited data availability in various applications. It accomplishes this by transferring knowledge from well-established source domains to a less familiar…

机器学习 · 统计学 2025-03-03 Yeheng Ge , Xueyu Zhou , Jian Huang

Transformer architectures show significant promise for natural language processing. Given that a single pretrained model can be fine-tuned to perform well on many different tasks, these networks appear to extract generally useful linguistic…

机器学习 · 计算机科学 2019-10-29 Andy Coenen , Emily Reif , Ann Yuan , Been Kim , Adam Pearce , Fernanda Viégas , Martin Wattenberg