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Conditional flow matching (CFM) stands out as an efficient, simulation-free approach for training flow-based generative models, achieving remarkable performance for data generation. However, CFM is insufficient to ensure accuracy in…

机器学习 · 计算机科学 2026-02-03 Yuhao Huang , Taos Transue , Shih-Hsin Wang , William Feldman , Hong Zhang , Bao Wang

Flow-based generative models (Dinh et al., 2014) are conceptually attractive due to tractability of the exact log-likelihood, tractability of exact latent-variable inference, and parallelizability of both training and synthesis. In this…

机器学习 · 统计学 2018-07-11 Diederik P. Kingma , Prafulla Dhariwal

We introduce FLOWR, a novel structure-based framework for the generation and optimization of three-dimensional ligands. FLOWR integrates continuous and categorical flow matching with equivariant optimal transport, enhanced by an efficient…

定量方法 · 定量生物学 2025-05-14 Julian Cremer , Ross Irwin , Alessandro Tibo , Jon Paul Janet , Simon Olsson , Djork-Arné Clevert

The generation of 3D molecules requires simultaneously deciding the categorical features~(atom types) and continuous features~(atom coordinates). Deep generative models, especially Diffusion Models (DMs), have demonstrated effectiveness in…

机器学习 · 计算机科学 2023-12-13 Yuxuan Song , Jingjing Gong , Minkai Xu , Ziyao Cao , Yanyan Lan , Stefano Ermon , Hao Zhou , Wei-Ying Ma

Generating high-dimensional visual modalities is a computationally intensive task. A common solution is progressive generation, where the outputs are synthesized in a coarse-to-fine spectral autoregressive manner. While diffusion models…

计算机视觉与模式识别 · 计算机科学 2025-06-25 Moayed Haji-Ali , Willi Menapace , Ivan Skorokhodov , Arpit Sahni , Sergey Tulyakov , Vicente Ordonez , Aliaksandr Siarohin

Designing metal-organic frameworks (MOFs) with novel chemistries is a longstanding challenge due to their large combinatorial space and complex 3D arrangements of the building blocks. While recent deep generative models have enabled…

生物大分子 · 定量生物学 2026-02-05 Nayoung Kim , Seongsu Kim , Sungsoo Ahn

Over the past decade, advances in generative modeling, such as generative adversarial networks, masked autoencoders, and diffusion models, have significantly transformed biological research and discovery, enabling breakthroughs in molecule…

机器学习 · 计算机科学 2026-03-10 Zihao Li , Zhichen Zeng , Xiao Lin , Feihao Fang , Yanru Qu , Zhe Xu , Zhining Liu , Xuying Ning , Tianxin Wei , Ge Liu , Hanghang Tong , Jingrui He

Design flows are the explicit combinations of design transformations, primarily involved in synthesis, placement and routing processes, to accomplish the design of Integrated Circuits (ICs) and System-on-Chip (SoC). Mostly, the flows are…

分布式、并行与集群计算 · 计算机科学 2019-01-25 Cunxi Yu , Houping Xiao , Giovanni De Micheli

Traditional structured prediction models try to learn the conditional likelihood, i.e., p(y|x), to capture the relationship between the structured output y and the input features x. For many models, computing the likelihood is intractable.…

机器学习 · 计算机科学 2020-02-28 You Lu , Bert Huang

Discovering heterogeneous catalysts tailored for specific reaction intermediates remains a fundamental bottleneck in materials science. While traditional trial-and-error methods and recent generative models have shown promise, they struggle…

材料科学 · 物理学 2026-05-19 Minkyu Kim , Nayoung Kim , Honghui Kim , Sungsoo Ahn

Visually-guided acoustic highlighting seeks to rebalance audio in alignment with the accompanying video, creating a coherent audio-visual experience. While visual saliency and enhancement have been widely studied, acoustic highlighting…

音频与语音处理 · 电气工程与系统科学 2026-02-05 Hugo Malard , Gael Le Lan , Daniel Wong , David Lou Alon , Yi-Chiao Wu , Sanjeel Parekh

Generating new molecules is fundamental to advancing critical applications such as drug discovery and material synthesis. Flows can generate molecules effectively by inverting the encoding process, however, existing flow models either…

机器学习 · 计算机科学 2022-10-14 Yogesh Verma , Samuel Kaski , Markus Heinonen , Vikas Garg

We introduce SynFormer, a generative modeling framework designed to efficiently explore and navigate synthesizable chemical space. Unlike traditional molecular generation approaches, we generate synthetic pathways for molecules to ensure…

机器学习 · 计算机科学 2024-10-07 Wenhao Gao , Shitong Luo , Connor W. Coley

Deep learning is emerging as an effective tool in drug discovery, with potential applications in both predictive and generative models. Generative Flow Networks (GFlowNets/GFNs) are a recently introduced method recognized for the ability to…

机器学习 · 计算机科学 2023-11-08 Elaine Lau , Nikhil Vemgal , Doina Precup , Emmanuel Bengio

Generative flows are attractive because they admit exact likelihood optimization and efficient image synthesis. Recently, Kingma & Dhariwal (2018) demonstrated with Glow that generative flows are capable of generating high quality images.…

机器学习 · 计算机科学 2019-05-21 Emiel Hoogeboom , Rianne van den Berg , Max Welling

Deep generative models provide a promising approach to de novo 3D peptide design. Most of them jointly model the distributions of peptide's position, orientation, and conformation, attempting to simultaneously converge to the target pocket.…

定量方法 · 定量生物学 2025-11-04 Dengdeng Huang , Shikui Tu

This paper focuses on a novel generative approach for 3D point clouds that makes use of invertible flow-based models. The main idea of the method is to treat a point cloud as a probability density in 3D space that is modeled using a…

机器学习 · 计算机科学 2019-10-17 Michał Stypułkowski , Maciej Zamorski , Maciej Zięba , Jan Chorowski

Synthesizability in small molecule generative design remains a bottleneck. Existing works that do consider synthesizability can output predicted synthesis routes for generated molecules. However, there has been minimal attention in…

生物大分子 · 定量生物学 2025-05-14 Jeff Guo , Víctor Sabanza-Gil , Zlatko Jončev , Jeremy S. Luterbacher , Philippe Schwaller

We introduce the first generative model trained on the JetClass dataset. Our model generates jets at the constituent level, and it is a permutation-equivariant continuous normalizing flow (CNF) trained with the flow matching technique. It…

高能物理 - 唯象学 · 物理学 2025-03-27 Joschka Birk , Erik Buhmann , Cedric Ewen , Gregor Kasieczka , David Shih

Flow-based generative models have shown remarkable success in text-to-image generation, yet fine-tuning them with intermediate feedback remains challenging, especially for continuous-time flow matching models. Most existing approaches…

机器学习 · 计算机科学 2025-10-22 Jiajun Fan , Chaoran Cheng , Shuaike Shen , Xiangxin Zhou , Ge Liu