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Biological molecular machines are bifunctional enzymes that catalyze two processes: one donating free energy and the other accepting it. Recent studies show that most protein enzymes have rich stochastic dynamics of transitions between the…

生物物理 · 物理学 2023-02-02 Michal Kurzynski , Przemyslaw Chelminiak

Macromolecular crowding in living biological cells effects subdiffusion of larger biomolecules such as proteins and enzymes. Mimicking this subdiffusion in terms of random walks on a critical percolation cluster, we here present a case…

亚细胞过程 · 定量生物学 2012-03-09 Leila Esmaeili Sereshki , Michael A. Lomholt , Ralf Metzler

In an asymmetric Szilard engine model of Maxwell's demon, we show the equivalence between information theoretical and thermodynamic entropies when the demon erases information optimally. The work gain by the engine can be exactly canceled…

经典物理 · 物理学 2011-12-13 Akio Hosoya , Koji Maruyama , Yutaka Shikano

We analyze quantitatively the generation of a continuous beam of atoms by the periodic injection of individual packets in a guide, followed by their overlapping. We show that slowing the packets using a moving mirror before their…

其他凝聚态物理 · 物理学 2008-09-15 Gaël Reinaudi , David Guery-Odelin

Enzymes are on the front lines of evolution. All living organisms rely on highly efficient, specific enzymes for growth, sustenance, and reproduction; and many diseases are a consequence of a mutation on an enzyme that affects its catalytic…

分子网络 · 定量生物学 2009-01-07 Nilou Ataie

We present a physical implementation of a Maxwell demon which consists of a conventional single electron transistor (SET) capacitively coupled to another quantum dot detecting its state. Altogether, the system is described by stochastic…

统计力学 · 物理学 2013-02-01 Philipp Strasberg , Gernot Schaller , Tobias Brandes , Massimiliano Esposito

Microbial electrolysis cells (MECs) employ electroactive bacteria to perform extracellular electron transfer, enabling hydrogen generation from biodegradable substrates. In previous work, we developed and analyzed a differential-algebraic…

种群与进化 · 定量生物学 2022-06-03 Harry J. Dudley , Zhiyong Jason Ren , David M. Bortz

We study the physical mechanism of Maxwell's Demon (MD) helping to do extra work in thermodynamic cycles, by describing measurement of position, insertion of wall and information erasing of MD in a quantum mechanical fashion. The heat…

量子物理 · 物理学 2015-05-19 H. Dong , D. Z. Xu , C. P. Sun

Recent experiments aimed at probing the dynamics of excitons have revealed that semiconducting films composed of disordered molecular subunits, unlike expectations for their perfectly ordered counterparts, can exhibit a time-dependent…

化学物理 · 物理学 2015-03-02 Elizabeth M. Y. Lee , William A. Tisdale , Adam P. Willard

Signal transduction in living cells is vital to maintain life itself, where information transfer in noisy environment plays a significant role. In a rather different context, the recent intensive researches of "Maxwell's demon" - a feedback…

统计力学 · 物理学 2015-06-30 Sosuke Ito , Takahiro Sagawa

Ion diffusion is a central part of materials physics of fabrication, deformation, phase transformation, structure stability and electrochemical devices. Conventional theory focuses on the defects that mediate diffusion and explains how…

材料科学 · 物理学 2019-08-21 Yanhao Dong , Liang Qi , Ju Li , I-Wei Chen

The relation between entropy and information dates back to the classical Maxwell demon (MD) paradox, a thought experiment proposed in 1867 by J. C. Maxwell to violate the second law of thermodynamics. A variant of the classical MD is the…

统计力学 · 物理学 2020-06-03 Marco Ribezzi-Crivellari , Felix Ritort

Precession Electron Diffraction (PED) offers a number of advantages for crystal structure analysis and solving unknown structures using electron diffraction. The current article uses many-beam simulations of PED intensities, in combination…

材料科学 · 物理学 2025-09-22 W. Sinkler , L. D. Marks

Data-free Knowledge Distillation (DFKD) has attracted attention recently thanks to its appealing capability of transferring knowledge from a teacher network to a student network without using training data. The main idea is to use a…

计算机视觉与模式识别 · 计算机科学 2022-09-22 Kien Do , Hung Le , Dung Nguyen , Dang Nguyen , Haripriya Harikumar , Truyen Tran , Santu Rana , Svetha Venkatesh

In this paper, we apply dimensional analysis to study a diffusive molecular communication system that uses diffusing enzymes in the propagation environment to mitigate intersymbol interference. The enzymes bind to information molecules and…

信息论 · 计算机科学 2013-11-21 Adam Noel , Karen C. Cheung , Robert Schober

This paper revisits the Maxwell Demon Problem. Representing the demon with a simple physical computer composed of a single memory element, we demonstrate that the average minimum entropy increase of the universe due to sorting of particles…

经典物理 · 物理学 2007-05-23 Roger D. Jones , Sven G. Redsun , Roger E. Frye

There have been many experimental investigations into the ability of electric fields to enhance combustion by acting upon ion species present in flames [1]. In this work, we examine this phenomenon using a one-dimensional model of a lean…

流体动力学 · 物理学 2022-02-09 Mario Sanchez Sanz , Daniel C. Murphy , C. Fernandez Pello

We propose a new inequality that we call the conditional ageing inequality (CAIN). The CAIN is a slight generalization to non-equilibrium situations of the Second Law of thermodynamics. The goal of this paper is to study the consequences of…

量子物理 · 物理学 2013-01-08 Robert R. Tucci

Maxwell's demons work by rectifying thermal fluctuations. They are not expected to function at macroscopic scales where fluctuations become negligible and dynamics become deterministic. We propose an electronic implementation of an…

统计力学 · 物理学 2022-10-05 Nahuel Freitas , Massimiliano Esposito

Recent experimental results have shown that active enzymes can diffuse faster when they are in the presence of their substrates. Fluorescence correlation spectroscopy (FCS), which relies on analyzing the fluctuations in fluorescence…

亚细胞过程 · 定量生物学 2019-09-25 Mengqi Xu , Lyanne Valdez , Aysuman Sen , Jennifer L. Ross