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Development of new medications is a very lengthy and costly process. Finding novel indications for existing drugs, or drug repositioning, can serve as a useful strategy to shorten the development cycle. In this study, we present an approach…

基因组学 · 定量生物学 2017-12-13 Kai Zhao , Hon-Cheong So

Background: Identifying new indications for approved drugs is a complex and time-consuming process that requires extensive knowledge of pharmacology, clinical data, and advanced computational methods. Recently, deep learning (DL) methods…

机器学习 · 计算机科学 2025-11-13 Shuting Jin , Yi Jiang , Yimin Liu , Tengfei Ma , Dongsheng Cao , Leyi Wei , Xiangrong Liu , Xiangxiang Zeng

A pharmacological effect of a drug on cells, organs and systems refers to the specific biochemical interaction produced by a drug substance, which is called its mechanism of action. Drug repositioning (or drug repurposing) is a fundamental…

机器学习 · 计算机科学 2020-05-19 Dehua Chen , Amir Jalilifard , Adriano Veloso , Nivio Ziviani

Most of the existing medicine recommendation systems that are mainly based on electronic medical records (EMRs) are significantly assisting doctors to make better clinical decisions benefiting both patients and caregivers. Even though the…

信息检索 · 计算机科学 2020-12-01 Fang Gong , Meng Wang , Haofen Wang , Sen Wang , Mengyue Liu

Drug repositioning aims to identify potential new indications for existing drugs to reduce the time and financial costs associated with developing new drugs. Most existing deep learning-based drug repositioning methods predominantly utilize…

机器学习 · 计算机科学 2025-06-02 Renye Zhang , Mengyun Yang , Qichang Zhao , Jianxin Wang

Drug repositioning (DR) refers to identification of novel indications for the approved drugs. The requirement of huge investment of time as well as money and risk of failure in clinical trials have led to surge in interest in drug…

计算与语言 · 计算机科学 2017-05-23 Sahil Manchanda , Ashish Anand

In recent decades, traditional drug research and development have been facing challenges such as high cost, long timelines, and high risks. To address these issues, many computational approaches have been suggested for predicting the…

定量方法 · 定量生物学 2023-09-13 Chunyan Ao , Zhichao Xiao , Lixin Guan , Liang Yu

Multimodal recommendation aims to integrate collaborative signals with heterogeneous content such as visual and textual information, but remains challenged by modality-specific noise, semantic inconsistency, and unstable propagation over…

信息检索 · 计算机科学 2026-02-02 Wei Yang , Rui Zhong , Yiqun Chen , Chi Lu , Peng Jiang

Recent advancements in multimodal pre-training models have significantly advanced computational pathology. However, current approaches predominantly rely on visual-language models, which may impose limitations from a molecular perspective…

计算机视觉与模式识别 · 计算机科学 2024-12-03 Minghao Han , Dingkang Yang , Jiabei Cheng , Xukun Zhang , Linhao Qu , Zizhi Chen , Lihua Zhang

Multimodal Recommendation (MMR) systems are crucial for modern platforms but are often hampered by inherent noise and uncertainty in modal features, such as blurry images, diverse visual appearances, or ambiguous text. Existing methods…

信息检索 · 计算机科学 2026-01-28 Xinzhuo Wu , Hongbo Wang , Yuan Lin , Kan Xu , Liang Yang , Hongfei Lin

Medication Recommendation (MR) is a promising research topic which booms diverse applications in the healthcare and clinical domains. However, existing methods mainly rely on sequential modeling and static graphs for representation…

机器学习 · 计算机科学 2025-01-16 Guanlin Liu , Xiaomei Yu , Zihao Liu , Xue Li , Xingxu Fan , Xiangwei Zheng

Accurate extraction of molecular representations is a critical step in the drug discovery process. In recent years, significant progress has been made in molecular representation learning methods, among which multi-modal molecular…

机器学习 · 计算机科学 2025-05-13 Rong Yin , Ruyue Liu , Xiaoshuai Hao , Xingrui Zhou , Yong Liu , Can Ma , Weiping Wang

Accurate prediction of compound potency accelerates early-stage drug discovery by prioritizing candidates for experimental testing. However, many Quantitative Structure-Activity Relationship (QSAR) approaches for this prediction are…

机器学习 · 计算机科学 2026-01-13 Sabrina Islam , Md. Atiqur Rahman , Md. Bakhtiar Hasan , Md. Hasanul Kabir

Similarity-driven multi-view linear reconstruction (SiMLR) is an algorithm that exploits inter-modality relationships to transform large scientific datasets into smaller, more well-powered and interpretable low-dimensional spaces. SiMLR…

机器学习 · 统计学 2021-01-22 Brian B. Avants , Nicholas J. Tustison , James R. Stone

Motivation: Drug combination is a sensible strategy for disease treatment by improving the efficacy and reducing concomitant side effects. Due to the large number of possible combinations among candidate compounds, exhaustive screening is…

定量方法 · 定量生物学 2020-02-26 Liang Yu , Mingfei Xia , Lin Gao

Traditional drug discovery methods are costly and time-consuming. Drug repositioning (DR) is a common strategy to overcome these issues. Recently, machine learning methods have been used extensively in DR problem. The performance of these…

定量方法 · 定量生物学 2021-10-05 Zahra Ghorbanali , Fatemeh Zare-Mirakabad , Bahram Mohammadpour

Accurate molecular property prediction (MPP) is a critical step in modern drug development. However, the scarcity of experimental validation data poses a significant challenge to AI-driven research paradigms. Under few-shot learning…

机器学习 · 计算机科学 2025-05-20 Yifan Dai , Xuanbai Ren , Tengfei Ma , Qipeng Yan , Yiping Liu , Yuansheng Liu , Xiangxiang Zeng

Existing multi-person pose estimators can be roughly divided into two-stage approaches (top-down and bottom-up approaches) and one-stage approaches. The two-stage methods either suffer high computational redundancy for additional person…

计算机视觉与模式识别 · 计算机科学 2020-12-01 Junqi Lin , Huixin Miao , Junjie Cao , Zhixun Su , Risheng Liu

Although deep learning (DL) has gained much popularity for accelerated magnetic resonance imaging (MRI), recent studies have shown that DL-based MRI reconstruction models could be oversensitive to tiny input perturbations (that are called…

图像与视频处理 · 电气工程与系统科学 2023-03-23 Hui Li , Jinghan Jia , Shijun Liang , Yuguang Yao , Saiprasad Ravishankar , Sijia Liu

Recent research on predicting the binding affinity between drug molecules and proteins use representations learned, through unsupervised learning techniques, from large databases of molecule SMILES and protein sequences. While these…

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