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Goal-oriented de novo molecule design, namely generating molecules with specific property or substructure constraints, is a crucial yet challenging task in drug discovery. Existing methods, such as Bayesian optimization and reinforcement…

计算工程、金融与科学 · 计算机科学 2025-02-28 Chuanliu Fan , Ziqiang Cao , Zicheng Ma , Nan Yu , Yimin Peng , Jun Zhang , Yiqin Gao , Guohong Fu

Discovering new materials can have significant scientific and technological implications but remains a challenging problem today due to the enormity of the chemical space. Recent advances in machine learning have enabled data-driven methods…

材料科学 · 物理学 2024-06-21 Shuyi Jia , Chao Zhang , Victor Fung

Large language models (LLMs) suffer from catastrophic forgetting during continual learning. Conventional rehearsal-based methods rely on previous training data to retain the model's ability, which may not be feasible in real-world…

计算与语言 · 计算机科学 2024-05-28 Jianheng Huang , Leyang Cui , Ante Wang , Chengyi Yang , Xinting Liao , Linfeng Song , Junfeng Yao , Jinsong Su

Can we leverage LLMs to model the process of discovering novel language model (LM) architectures? Inspired by real research, we propose a multi-agent LLM approach that simulates the conventional stages of research, from ideation and…

人工智能 · 计算机科学 2025-06-26 Junyan Cheng , Peter Clark , Kyle Richardson

Accessing the synthesizability of crystal structures is pivotal for advancing the practical application of theoretical material structures designed by machine learning or high-throughput screening. However, a significant gap exists between…

材料科学 · 物理学 2024-07-10 Zhilong Song , Shuaihua Lu , Minggang Ju , Qionghua Zhou , Jinlan Wang

Large Language Models (LLMs) have demonstrated great performance in few-shot In-Context Learning (ICL) for a variety of generative and discriminative chemical design tasks. The newly expanded context windows of LLMs can further improve ICL…

Large Language models (LLMs) have emerged as powerful tools for addressing challenges across diverse domains. Notably, recent studies have demonstrated that large language models significantly enhance the efficiency of biomolecular analysis…

计算与语言 · 计算机科学 2025-03-07 Jiyue Jiang , Zikang Wang , Yuheng Shan , Heyan Chai , Jiayi Li , Zixian Ma , Xinrui Zhang , Yu Li

In the era of big data, access to abundant data is crucial for driving research forward. However, such data is often inaccessible due to privacy concerns or high costs, particularly in healthcare domain. Generating synthetic (tabular) data…

机器学习 · 计算机科学 2026-04-10 Yaobin Ling , Xiaoqian Jiang , Yejin Kim

Large Language Models (LLMs) stand at the forefront of a number of Natural Language Processing (NLP) tasks. Despite the widespread adoption of LLMs in NLP, much of their potential in broader fields remains largely unexplored, and…

机器学习 · 计算机科学 2024-03-11 Zhiqiang Zhong , Kuangyu Zhou , Davide Mottin

Mathematical programming is widely employed across various sectors - such as logistics, energy, and workforce planning - to model and solve industrial optimisation problems, but its use requires substantial domain expertise. Large language…

编程语言 · 计算机科学 2026-05-29 Roberto Rossi , Steven D. Prestwich

The nuclear industry possesses a wealth of valuable information locked away in unstructured text data. This data, however, is not readily usable for advanced Large Language Model (LLM) applications that require clean, structured…

计算与语言 · 计算机科学 2025-06-11 Muhammad Anwar , Daniel Lau , Mishca de Costa , Issam Hammad

Large Language Models (LLMs) have the potential to accelerate small molecule drug design due to their ability to reason about information from diverse sources and formats. However, their practical utility remains unclear due to the lack of…

Automating the decision of whether a code change requires manual review is vital for maintaining software quality in modern development workflows. However, the emergence of new programming languages and frameworks creates a critical…

软件工程 · 计算机科学 2025-09-08 Yogev Cohen , Dudi Ohayon , Romy Somkin , Yehudit Aperstein , Alexander Apartsin

Generative models have demonstrated substantial promise in Natural Language Processing (NLP) and have found application in designing molecules, as seen in General Pretrained Transformer (GPT) models. In our efforts to develop such a tool…

机器学习 · 计算机科学 2023-11-27 Niklas Dobberstein , Astrid Maass , Jan Hamaekers

In practice, clinicians achieve a diagnosis by following a sequence of steps, such as laboratory exams, observations, or imaging. The pathways to reach diagnosis decisions are documented by guidelines authored by expert organizations, which…

计算与语言 · 计算机科学 2024-09-25 Elisa Castagnari , Lillian Muyama , Adrien Coulet

Molecular property prediction and generative design via deep learning models has been the subject of intense research given its potential to accelerate development of new, high-performance materials. More recently, these workflows have been…

人工智能 · 计算机科学 2024-12-16 Nathaniel H. Park , Tiffany J. Callahan , James L. Hedrick , Tim Erdmann , Sara Capponi

Large Language Models (LLMs) have democratized synthetic data generation, which in turn has the potential to simplify and broaden a wide gamut of NLP tasks. Here, we tackle a pervasive problem in synthetic data generation: its generative…

计算与语言 · 计算机科学 2023-05-25 Veniamin Veselovsky , Manoel Horta Ribeiro , Akhil Arora , Martin Josifoski , Ashton Anderson , Robert West

Producing accurate software models is crucial in model-driven software engineering (MDE). However, modeling complex systems is an error-prone task that requires deep application domain knowledge. In the past decade, several automated…

Materials design often relies on human-generated hypotheses, a process inherently limited by cognitive constraints such as knowledge gaps and limited ability to integrate and extract knowledge implications, particularly when…

Large Language Models (LLMs) are increasingly used to generate synthetic textual data for training smaller specialized models. However, a comparison of various generation strategies for low-resource language settings is lacking. While…

计算与语言 · 计算机科学 2025-09-22 Tatiana Anikina , Jan Cegin , Jakub Simko , Simon Ostermann