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Most spreading processes require spatial proximity between agents. The stationary state of spreading dynamics in a population of mobile agents thus depends on the interplay between the time and length scales involved in the epidemic process…

统计力学 · 物理学 2024-03-05 Jorge P. Rodríguez , Matteo Paoluzzi , Demian Levis , Michele Starnini

The ability of eukaryotic cells to squeeze through constrictions is limited by the stiffness of their large and rigid nucleus. However, migrating cells are often able to overcome this limitation and pass through constrictions much smaller…

生物物理 · 物理学 2023-12-20 Sirine Amiri , Yirui Zhang , Andonis Gerardos , Cécile Sykes , Pierre Ronceray

In this paper we analyze an imaging technique based on intensity speckle correlations over incident field position proposed in [J. A. Newmann and K. J. Webb, Phys. Rev. Lett. 113, 263903 (2014)]. Its purpose is to reconstruct a field…

偏微分方程分析 · 数学 2018-08-01 Josselin Garnier , Knut Solna

We investigate morphologies of proliferating cellular tissue using a newly developed numerical simulation model for mechanical cell division. The model reproduces structures of simple multi-cellular organisms via simple rules for selective…

软凝聚态物质 · 物理学 2018-11-20 Pranav Madhikar , Jan Åström , Björn Baumeier , Mikko Karttunen

In this paper we consider a model based on branching process theory for the proliferation and the dissemination network of T cells in the adaptive immune response. A multi-type Galton Watson branching process is assumed as the basic…

定量方法 · 定量生物学 2015-06-09 Alessandro Boianelli , Antonio Vicino

Mechanical signaling plays a key role in biological processes like embryo development and cancer growth. One prominent way to probe mechanical properties of tissues is to study their response to externally applied forces. Using a…

软凝聚态物质 · 物理学 2017-04-18 D. A. Matoz-Fernandez , Elisabeth Agoritsas , Jean-Louis Barrat , Eric Bertin , Kirsten Martens

We discuss velocity-jump models for chemotaxis of bacteria with an internal state that allows the velocity jump rate to depend on the memory of the chemoattractant concentration along their path of motion. Using probabilistic techniques, we…

数值分析 · 数学 2011-11-23 Mathias Rousset , Giovanni Samaey

Scope of the present work is to frame into a rigorous, quantitative scaffold - stemmed from stochastic process theory - two sets of experiments designed to infer the spontaneous organization of leukocytes against cancer cells, namely mice…

Despite recent advances in the field of Oncoimmunology, the success potential of immunomodulatory therapies against cancer remains to be elucidated. One of the reasons is the lack of understanding on the complex interplay between tumor…

组织与器官 · 定量生物学 2015-07-24 A. I. Reppas , J. C. L. Alfonso , H. Hatzikirou

The inverse geometric approach to the modeling of the growth of circular objects revealing required features, such as the velocity of the growth and fractal behavior of their contours, is presented. It enables to reproduce some of the…

医学物理 · 物理学 2007-05-23 Branislav Brutovsky , Denis Horvath , Vladimir Lisy

During embryonic development tissue morphogenesis and signaling are tightly coupled. It is therefore important to simulate both tissue morphogenesis and signaling simultaneously in in silico models of developmental processes. The resolution…

组织与器官 · 定量生物学 2013-05-28 Dagmar Iber , Simon Tanaka , Patrick Fried , Philipp Germann , Denis Menshykau

We consider a drift-diffusion model, with an unknown function depending on the spatial variable and an additional structural variable, the amount of ingested lipid. The diffusion coefficient depends on this additional variable. The drift…

偏微分方程分析 · 数学 2023-05-10 Cosmin Burtea , Nicolas Meunier , Clément Mouhot

Coordinated movements of epithelia tissue are linked with active matter processes. We here consider the influence of curvature on the spatiotemporal arrangements and the shapes of the cells. The cells are represented by a multiphase field…

软凝聚态物质 · 物理学 2023-04-18 Lea Happel , Dennis Wenzel , Axel Voigt

Macrophages function as sentinel, cell-regulatory hubs capable of initiating, perpetuating and contributing to the resolution of an inflammatory response, following their activation from a resting state. Highly complex and varied gene…

细胞行为 · 定量生物学 2011-02-17 Peter Ghazal , Steven Watterson , Kevin Robertson , David C Kluth

Learning dynamical systems from sparse observations is critical in numerous fields, including biology, finance, and physics. Even if tackling such problems is standard in general information fusion, it remains challenging for contemporary…

机器学习 · 计算机科学 2024-06-04 Ella Tamir , Arno Solin

In order to study the effect of cell elastic properties on the behavior of assemblies of motile cells, this paper describes an alternative to the cell phase field (CPF) \cite{Palmieri2015} we have previously proposed. The CPF is a…

软凝聚态物质 · 物理学 2019-05-23 Yony Bresler , Benoit Palmieri , Martin Grant

Collective cell migration plays a crucial role in many developmental processes that underlie morphogenesis, wound healing, or cancer progression. In such coordinated behaviours, cells are organised in coherent structures and actively…

软凝聚态物质 · 物理学 2021-06-16 Carolina Trenado , Luis L. Bonilla , Alejandro Martínez-Calvo

Collective cell migration plays a central role in tissue development, morphogenesis, wound repair and cancer progression. With the growing realization that physical forces mediate cell motility in development and physiology, a key…

生物物理 · 物理学 2018-12-07 Shiladitya Banerjee , M. Cristina Marchetti

Immune cells recognize and discriminate antigens through immunological synapses - dynamic intercellular junctions exhibiting highly organized receptor-ligand patterns. While much work has focused on molecular kinetics and passive mechanisms…

细胞行为 · 定量生物学 2025-10-22 Tony Wong , Tom Chou , Suraj Shankar , Shenshen Wang

Several studies suggest that one possible cause of impaired wound healing is failed or insufficient lymphangiogenesis, that is the formation of new lymphatic capillaries. Although many mathematical models have been developed to describe the…

组织与器官 · 定量生物学 2015-01-05 Arianna Bianchi , Kevin J. Painter , Jonathan A. Sherratt