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Embedding-based retrieval models have made significant strides in retrieval-augmented generation (RAG) techniques for text and multimodal large language models (LLMs) applications. However, when it comes to speech larage language models…

音频与语音处理 · 电气工程与系统科学 2025-12-11 Chunyu Sun , Bingyu Liu , Zhichao Cui , Junhan Shi , Anbin Qi , Tian-hao Zhang , Dinghao Zhou , Lewei Lu

The large language models have achieved superior performance on various natural language tasks. One major drawback of such approaches is they are resource-intensive in fine-tuning new datasets. Soft-prompt tuning presents a…

计算与语言 · 计算机科学 2023-10-30 Guoxin Chen , Yiming Qian , Bowen Wang , Liangzhi Li

Clustering analysis is fundamental in single-cell RNA sequencing (scRNA-seq) data analysis for elucidating cellular heterogeneity and diversity. Recent graph-based scRNA-seq clustering methods, particularly graph neural networks (GNNs),…

机器学习 · 计算机科学 2025-07-15 Ping Xu , Pengfei Wang , Zhiyuan Ning , Meng Xiao , Min Wu , Yuanchun Zhou

Diffusion models have exhibited substantial success in text-to-image generation. However, they often encounter challenges when dealing with complex and dense prompts involving multiple objects, attribute binding, and long descriptions. In…

计算机视觉与模式识别 · 计算机科学 2024-08-28 Mushui Liu , Yuhang Ma , Yang Zhen , Jun Dan , Yunlong Yu , Zeng Zhao , Zhipeng Hu , Bai Liu , Changjie Fan

Proteins adopt multiple structural conformations to perform their diverse biological functions, and understanding these conformations is crucial for advancing drug discovery. Traditional physics-based simulation methods often struggle with…

生物大分子 · 定量生物学 2025-03-14 Jiarui Lu , Xiaoyin Chen , Stephen Zhewen Lu , Chence Shi , Hongyu Guo , Yoshua Bengio , Jian Tang

Large Language Models (LLMs) have shown remarkable ability in solving complex tasks, making them a promising tool for enhancing tabular learning. However, existing LLM-based methods suffer from high resource requirements, suboptimal…

机器学习 · 计算机科学 2025-05-12 Ruxue Shi , Hengrui Gu , Xu Shen , Xin Wang

Large language models (LLMs) and emerging agentic frameworks are beginning to transform single-cell biology by enabling natural-language reasoning, generative annotation, and multimodal data integration. However, progress remains fragmented…

While contrastive learning is proven to be an effective training strategy in computer vision, Natural Language Processing (NLP) is only recently adopting it as a self-supervised alternative to Masked Language Modeling (MLM) for improving…

计算与语言 · 计算机科学 2021-09-16 Hooman Sedghamiz , Shivam Raval , Enrico Santus , Tuka Alhanai , Mohammad Ghassemi

With the growing influence of Large Language Models (LLMs), there is increasing interest in integrating speech representations with them to enable more seamless multi-modal processing and speech understanding. This study introduces a novel…

计算与语言 · 计算机科学 2025-06-02 Amirbek Djanibekov , Hanan Aldarmaki

Large language models (LLMs) have garnered significant attention for their remarkable capabilities across various domains, whose vast parameter scales present challenges for practical deployment. Structured pruning is an effective method to…

人工智能 · 计算机科学 2024-12-25 Gui Ling , Ziyang Wang , Yuliang Yan , Qingwen Liu

Surgical AI often involves multiple tasks within a single procedure, like phase recognition or assessing the Critical View of Safety in laparoscopic cholecystectomy. Traditional models, built for one task at a time, lack flexibility,…

计算机视觉与模式识别 · 计算机科学 2025-07-11 Soham Walimbe , Britty Baby , Vinkle Srivastav , Nicolas Padoy

Large Language Models (LLMs) have demonstrated exceptional proficiency in text understanding and embedding tasks. However, their potential in multimodal representation, particularly for item-to-item (I2I) recommendations, remains…

信息检索 · 计算机科学 2025-01-22 Chao Zhang , Haoxin Zhang , Shiwei Wu , Di Wu , Tong Xu , Xiangyu Zhao , Yan Gao , Yao Hu , Enhong Chen

Discovering genes with similar functions across diverse biomedical contexts poses a significant challenge in gene representation learning due to data heterogeneity. In this study, we resolve this problem by introducing a novel model called…

机器学习 · 计算机科学 2023-10-05 Tianyu Liu , Yuge Wang , Rex Ying , Hongyu Zhao

Transcriptome foundation models TFMs hold great promises of deciphering the transcriptomic language that dictate diverse cell functions by self-supervised learning on large-scale single-cell gene expression data, and ultimately unraveling…

机器学习 · 计算机科学 2025-03-03 Xinyu Yuan , Zhihao Zhan , Zuobai Zhang , Manqi Zhou , Jianan Zhao , Boyu Han , Yue Li , Jian Tang

Single-cell RNA sequencing (scRNA-seq) has made significant strides in unraveling the intricate cellular diversity within complex tissues. This is particularly critical in the brain, presenting a greater diversity of cell types than other…

机器学习 · 计算机科学 2023-10-05 Gyutaek Oh , Baekgyu Choi , Inkyung Jung , Jong Chul Ye

The integration of Large Language Models (LLMs) with Graph Representation Learning (GRL) marks a significant evolution in analyzing complex data structures. This collaboration harnesses the sophisticated linguistic capabilities of LLMs to…

机器学习 · 计算机科学 2024-02-12 Qiheng Mao , Zemin Liu , Chenghao Liu , Zhuo Li , Jianling Sun

Advances in single-cell RNA sequencing enable the rapid generation of massive, high-dimensional datasets, yet the accumulation of data across experiments introduces batch effects that obscure true biological signals. Existing batch…

机器学习 · 计算机科学 2026-03-02 Quang-Huy Nguyen , Zongliang Yue , Hao Chen , Wei-Shinn Ku , Jiaqi Wang

How to learn a better speech representation for end-to-end speech-to-text translation (ST) with limited labeled data? Existing techniques often attempt to transfer powerful machine translation (MT) capabilities to ST, but neglect the…

计算与语言 · 计算机科学 2022-03-22 Qingkai Fang , Rong Ye , Lei Li , Yang Feng , Mingxuan Wang

Protein language models (PLMs) have demonstrated remarkable capabilities in learning relationships between protein sequences and functions. However, finetuning these large models requires substantial computational resources, often with…

机器学习 · 计算机科学 2025-12-09 Shuo Zhang , Jian K. Liu

Molecule discovery plays a crucial role in various scientific fields, advancing the design of tailored materials and drugs. However, most of the existing methods heavily rely on domain experts, require excessive computational cost, or…

计算与语言 · 计算机科学 2024-05-10 Jiatong Li , Yunqing Liu , Wenqi Fan , Xiao-Yong Wei , Hui Liu , Jiliang Tang , Qing Li