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相关论文: GraphT5: Unified Molecular Graph-Language Modeling…

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Graph-structured data is prevalent in the real world. Recently, due to the powerful emergent capabilities, Large Language Models (LLMs) have shown promising performance in modeling graphs. The key to effectively applying LLMs on graphs is…

计算与语言 · 计算机科学 2024-10-16 Haitong Luo , Xuying Meng , Suhang Wang , Tianxiang Zhao , Fali Wang , Hanyun Cao , Yujun Zhang

Optical Chemical Structure Recognition (OCSR) is essential for converting molecular images into machine-readable formats. While recent vision-language models (VLMs) have shown promise, their image-captioning approach often struggles with…

Purpose: Large Language Models (LLMs) like GPT (Generative Pre-trained Transformer) from OpenAI and LLaMA (Large Language Model Meta AI) from Meta AI are increasingly recognized for their potential in the field of cheminformatics,…

生物大分子 · 定量生物学 2024-05-22 Shaghayegh Sadeghi , Alan Bui , Ali Forooghi , Jianguo Lu , Alioune Ngom

Large Language Models (LLMs) stand at the forefront of a number of Natural Language Processing (NLP) tasks. Despite the widespread adoption of LLMs in NLP, much of their potential in broader fields remains largely unexplored, and…

机器学习 · 计算机科学 2024-03-11 Zhiqiang Zhong , Kuangyu Zhou , Davide Mottin

Pretrained Language Models (PLMs) benefit from external knowledge stored in graph structures for various downstream tasks. However, bridging the modality gap between graph structures and text remains a significant challenge. Traditional…

计算与语言 · 计算机科学 2024-04-11 Shuzhou Yuan , Michael Färber

Recent advances in sign language research have benefited from CNN-based backbones, which are primarily transferred from traditional computer vision tasks (\eg object identification, image recognition). However, these CNN-based backbones…

计算机视觉与模式识别 · 计算机科学 2025-05-20 Shiwei Gan , Yafeng Yin , Zhiwei Jiang , Hongkai Wen , Lei Xie , Sanglu Lu

With the increasing attention to molecular machine learning, various innovations have been made in designing better models or proposing more comprehensive benchmarks. However, less is studied on the data preprocessing schedule for molecular…

机器学习 · 计算机科学 2024-07-30 Yuchen Shen , Barnabás Póczos

Large Language Models have demonstrated remarkable capabilities in generating contextually relevant and grammatically correct text. However, they fundamentally lack the ability to process and respond to emotional context in a manner…

神经与进化计算 · 计算机科学 2026-05-15 Eslam Reda , Sara El-Metwally

Comparing graphs to identify similarities is a fundamental task in visual analytics of graph data. To support this, visual analytics systems frequently employ quantitative computational measures to provide automated guidance. However, it…

人机交互 · 计算机科学 2026-02-27 Seokweon Jung , Jeongmin Rhee , Seoyoung Doh , Hyeon Jeon , Ghulam Jilani Quadri , Jinwook Seo

Large language models (LLMs) show promising performance on small-scale graph reasoning tasks but fail when handling real-world graphs with complex queries. This phenomenon arises from LLMs' working memory constraints, which result in their…

人工智能 · 计算机科学 2025-10-01 Rongzheng Wang , Shuang Liang , Qizhi Chen , Yihong Huang , Muquan Li , Yizhuo Ma , Dongyang Zhang , Ke Qin , Man-Fai Leung

AI for drug discovery has been a research hotspot in recent years, and SMILES-based language models has been increasingly applied in drug molecular design. However, no work has explored whether and how language models understand the…

机器学习 · 计算机科学 2024-01-17 Xiuyuan Hu , Guoqing Liu , Yang Zhao , Hao Zhang

Combining multiple knowledge graphs (KGs) across linguistic boundaries is a persistent challenge due to semantic heterogeneity and the complexity of graph environments. We propose a framework for cross-lingual graph fusion, leveraging the…

计算与语言 · 计算机科学 2026-03-24 Kaung Myat Kyaw , Khush Agarwal , Jonathan Chan

We seek to automate the design of molecules based on specific chemical properties. Our primary contributions are a simpler method for generating SMILES strings guaranteed to be chemically valid, using a combination of a new context-free…

机器学习 · 计算机科学 2018-11-29 Egor Kraev

Large language models show great potential in unstructured data understanding, but still face significant challenges with graphs due to their structural hallucination. Existing approaches mainly either verbalize graphs into natural…

计算与语言 · 计算机科学 2026-02-03 Jingyao Wu , Bin Lu , Zijun Di , Xiaoying Gan , Meng Jin , Luoyi Fu , Xinbing Wang , Chenghu Zhou

The integration of deep learning, particularly AI-Generated Content, with high-quality data derived from ab initio calculations has emerged as a promising avenue for transforming the landscape of scientific research. However, the challenge…

机器学习 · 计算机科学 2024-12-11 Kaiwei Zhang , Yange Lin , Guangcheng Wu , Yuxiang Ren , Xuecang Zhang , Bo wang , Xiaoyu Zhang , Weitao Du

Multimodal large language models (MLLMs) are designed to process and integrate information from multiple sources, such as text, speech, images, and videos. Despite its success in language understanding, it is critical to evaluate the…

计算机视觉与模式识别 · 计算机科学 2024-04-11 Hao Lu , Xuesong Niu , Jiyao Wang , Yin Wang , Qingyong Hu , Jiaqi Tang , Yuting Zhang , Kaishen Yuan , Bin Huang , Zitong Yu , Dengbo He , Shuiguang Deng , Hao Chen , Yingcong Chen , Shiguang Shan

Molecular representation learning plays an essential role in cheminformatics. Recently, language model-based approaches have gained popularity as an alternative to traditional expert-designed features to encode molecules. However, these…

机器学习 · 计算机科学 2022-04-19 Zhihui Guo , Pramod Sharma , Andy Martinez , Liang Du , Robin Abraham

Molecular property prediction aims to learn representations that map chemical structures to functional properties. While multimodal learning has emerged as a powerful paradigm to learn molecular representations, prior works have largely…

机器学习 · 计算机科学 2026-03-03 Feng Jiang , Mangal Prakash , Hehuan Ma , Jianyuan Deng , Yuzhi Guo , Amina Mollaysa , Tommaso Mansi , Rui Liao , Junzhou Huang

Molecular activity prediction is critical in drug design. Machine learning techniques such as kernel methods and random forests have been successful for this task. These models require fixed-size feature vectors as input while the molecules…

机器学习 · 计算机科学 2018-01-30 Trang Pham , Truyen Tran , Svetha Venkatesh

Chart question answering (ChartQA) is challenged by the heterogeneous composition of chart elements and the subtle data patterns they encode. This work introduces a novel joint multimodal scene graph framework that explicitly models the…

计算与语言 · 计算机科学 2025-04-08 Yue Dai , Soyeon Caren Han , Wei Liu