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After a period of decrease, interest in word alignments is increasing again for their usefulness in domains such as typological research, cross-lingual annotation projection, and machine translation. Generally, alignment algorithms only use…

计算与语言 · 计算机科学 2022-08-11 Ayyoob Imani , Lütfi Kerem Şenel , Masoud Jalili Sabet , François Yvon , Hinrich Schütze

Many NLP applications can be framed as a graph-to-sequence learning problem. Previous work proposing neural architectures on this setting obtained promising results compared to grammar-based approaches but still rely on linearisation…

计算与语言 · 计算机科学 2018-06-27 Daniel Beck , Gholamreza Haffari , Trevor Cohn

In this paper, from a theoretical perspective, we study how powerful graph neural networks (GNNs) can be for learning approximation algorithms for combinatorial problems. To this end, we first establish a new class of GNNs that can solve a…

机器学习 · 计算机科学 2019-11-11 Ryoma Sato , Makoto Yamada , Hisashi Kashima

Graph neural networks (GNNs), which are capable of learning representations from graphical data, are naturally suitable for modeling molecular systems. This review introduces GNNs and their various applications for small organic molecules.…

机器学习 · 计算机科学 2023-10-10 Yuyang Wang , Zijie Li , Amir Barati Farimani

Deep Neural Networks have shown tremendous success in the area of object recognition, image classification and natural language processing. However, designing optimal Neural Network architectures that can learn and output arbitrary graphs…

机器学习 · 计算机科学 2019-07-02 Mital Kinderkhedia

Affinity graph-based segmentation methods have become a major trend in computer vision. The performance of these methods relies on the constructed affinity graph, with particular emphasis on the neighborhood topology and pairwise affinities…

计算机视觉与模式识别 · 计算机科学 2021-10-25 Yang Zhang , Moyun Liu , Huiming Zhang , Guodong Sun , Jingwu He

Molecular graph neural networks (GNNs) often focus exclusively on XYZ-based geometric representations and thus overlook valuable chemical context available in public databases like PubChem. This work introduces a multimodal framework that…

机器学习 · 计算机科学 2025-05-20 Can Polat , Hasan Kurban , Erchin Serpedin , Mustafa Kurban

Recurrent Neural Networks (RNNs) are among the most successful machine learning models for sequence modelling, but tend to suffer from an exponential increase in the number of parameters when dealing with large multidimensional data. To…

机器学习 · 计算机科学 2021-05-12 Yao Lei Xu , Danilo P. Mandic

The graph data structure is a staple in mathematics, yet graph-based machine learning is a relatively green field within the domain of data science. Recent advances in graph-based ML and open source implementations of relevant algorithms…

机器学习 · 计算机科学 2021-04-06 Keenan Venuti

Properties of molecules are indicative of their functions and thus are useful in many applications. With the advances of deep learning methods, computational approaches for predicting molecular properties are gaining increasing momentum.…

定量方法 · 定量生物学 2021-07-07 Zhengyang Wang , Meng Liu , Youzhi Luo , Zhao Xu , Yaochen Xie , Limei Wang , Lei Cai , Qi Qi , Zhuoning Yuan , Tianbao Yang , Shuiwang Ji

Naive Retrieval-Augmented Generation (RAG) focuses on individual documents during retrieval and, as a result, falls short in handling networked documents which are very popular in many applications such as citation graphs, social media, and…

机器学习 · 计算机科学 2025-07-15 Yuntong Hu , Zhihan Lei , Zheng Zhang , Bo Pan , Chen Ling , Liang Zhao

Large Language Models (LLMs) excel at code generation but struggle with complex problems. Retrieval-Augmented Generation (RAG) mitigates this issue by integrating external knowledge, yet retrieval models often miss relevant context, and…

软件工程 · 计算机科学 2026-01-29 Shahd Seddik , Fahd Seddik , Iman Saberi , Fatemeh Fard , Minh Hieu Huynh , Patanamon Thongtanunam

With the continuous popularity of deep learning and representation learning, fast vector search becomes a vital task in various ranking/retrieval based applications, say recommendation, ads ranking and question answering. Neural network…

信息检索 · 计算机科学 2023-12-29 Weijie Zhao , Shulong Tan , Ping Li

Introduction: molecular geometry, the three-dimensional arrangement of atoms within a molecule, is fundamental to understanding chemical reactivity, physical properties, and biological activity. The prevailing models used to describe…

综合物理 · 物理学 2026-05-12 Sebastian Ali Sacasa-Cespedes

A large number of real-world networks include multiple types of nodes and edges. Graph Neural Network (GNN) emerged as a deep learning framework to generate node and graph embeddings for downstream machine learning tasks. However, popular…

机器学习 · 计算机科学 2024-11-26 Ziynet Nesibe Kesimoglu , Serdar Bozdag

Generating novel graph structures that optimize given objectives while obeying some given underlying rules is fundamental for chemistry, biology and social science research. This is especially important in the task of molecular graph…

机器学习 · 计算机科学 2019-02-26 Jiaxuan You , Bowen Liu , Rex Ying , Vijay Pande , Jure Leskovec

Graph Neural Networks (GNNs) are widely adopted in Web-related applications, serving as a core technique for learning from graph-structured data, such as text-attributed graphs. Yet in real-world scenarios, such graphs exhibit deficiencies…

机器学习 · 计算机科学 2025-10-03 Zhaoyan Wang , Zheng Gao , Arogya Kharel , In-Young Ko

Recent works leveraging Graph Neural Networks to approach graph matching tasks have shown promising results. Recent progress in learning discrete distributions poses new opportunities for learning graph matching models. In this work, we…

机器学习 · 计算机科学 2021-09-14 Linfeng Liu , Michael C. Hughes , Soha Hassoun , Li-Ping Liu

One main challenge in imbalanced graph classification is to learn expressive representations of the graphs in under-represented (minority) classes. Existing generic imbalanced learning methods, such as oversampling and imbalanced learning…

机器学习 · 计算机科学 2024-05-20 Rongrong Ma , Guansong Pang , Ling Chen

Graph Neural Networks have revolutionized many machine learning tasks in recent years, ranging from drug discovery, recommendation systems, image classification, social network analysis to natural language understanding. This paper shows…

机器学习 · 计算机科学 2021-05-14 Faez Ahmed , Yaxin Cui , Yan Fu , Wei Chen
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