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The FungiCLEF 2025 competition addresses the challenge of automatic fungal species recognition using realistic, field-collected observational data. Accurate identification tools support both mycologists and citizen scientists, greatly…

计算机视觉与模式识别 · 计算机科学 2025-09-16 Abdarahmane Traore , Éric Hervet , Andy Couturier

Deep reinforcement learning (RL) algorithms have recently achieved remarkable successes in various sequential decision making tasks, leveraging advances in methods for training large deep networks. However, these methods usually require…

机器学习 · 计算机科学 2020-06-30 Kei Ota , Tomoaki Oiki , Devesh K. Jha , Toshisada Mariyama , Daniel Nikovski

The escalating economic losses in agriculture due to deer intrusion, estimated to be in the hundreds of millions of dollars annually in the U.S., highlight the inadequacy of traditional mitigation strategies such as hunting, fencing, use of…

计算机视觉与模式识别 · 计算机科学 2026-03-27 Bishal Adhikari , Jiajia Li , Eric S. Michel , Jacob Dykes , Te-Ming Paul Tseng , Mary Love Tagert , Dong Chen

In recent years, deep learning has shown great promise in the automated detection and classification of brain tumors from MRI images. However, achieving high accuracy and computational efficiency remains a challenge. In this research, we…

图像与视频处理 · 电气工程与系统科学 2025-07-10 Daniel Onah , Ravish Desai

In this paper, we investigate the problem of counting rosette leaves from an RGB image, an important task in plant phenotyping. We propose a data-driven approach for this task generalized over different plant species and imaging setups. To…

计算机视觉与模式识别 · 计算机科学 2017-08-30 Shubhra Aich , Ian Stavness

Evolutionary Computation algorithms have been used to solve optimization problems in relation with architectural, hyper-parameter or training configuration, forging the field known today as Neural Architecture Search. These algorithms have…

神经与进化计算 · 计算机科学 2024-02-06 Javier Poyatos , Daniel Molina , Aitor Martínez , Javier Del Ser , Francisco Herrera

Pith detection in tree cross-sections is essential for forestry and wood quality analysis but remains a manual, error-prone task. This study evaluates deep learning models -- YOLOv9, U-Net, Swin Transformer, DeepLabV3, and Mask R-CNN -- to…

计算机视觉与模式识别 · 计算机科学 2025-12-02 Tzu-I Liao , Mahmoud Fakhry , Jibin Yesudas Varghese

Background: RETFound, a self-supervised, retina-specific foundation model (FM), showed potential in downstream applications. However, its comparative performance with traditional deep learning (DL) models remains incompletely understood.…

Data-efficient image classification is a challenging task that aims to solve image classification using small training data. Neural network-based deep learning methods are effective for image classification, but they typically require…

神经与进化计算 · 计算机科学 2022-12-05 Ying Bi , Bing Xue , Mengjie Zhang

Repetitive DNA sequences underpin genome architecture and evolutionary processes, yet they remain challenging to classify accurately. Terrier is a deep learning model designed to overcome these challenges by classifying repetitive DNA…

基因组学 · 定量生物学 2025-07-10 Robert Turnbull , Neil D. Young , Edoardo Tescari , Lee F. Skerratt , Tiffany A. Kosch

Deep learning is recognized to be capable of discovering deep features for representation learning and pattern recognition without requiring elegant feature engineering techniques by taking advantage of human ingenuity and prior knowledge.…

机器学习 · 计算机科学 2020-04-02 Zhi Han , Siquan Yu , Shao-Bo Lin , Ding-Xuan Zhou

Phylogenetic trees elucidate evolutionary relationships among species, but phylogenetic inference remains challenging due to the complexity of combining continuous (branch lengths) and discrete parameters (tree topology). Traditional Markov…

种群与进化 · 定量生物学 2024-12-30 ChenRui Duan , Zelin Zang , Siyuan Li , Yongjie Xu , Stan Z. Li

Phylogenetic networks are increasingly used in evolutionary biology to represent the history of species that have undergone reticulate events such as horizontal gene transfer, hybrid speciation and recombination. One of the most fundamental…

种群与进化 · 定量生物学 2016-10-07 Philippe Gambette , Leo van Iersel , Steven Kelk , Fabio Pardi , Celine Scornavacca

Phylogenetic networks are necessary to represent the tree of life expanded by edges to represent events such as horizontal gene transfers, hybridizations or gene flow. Not all species follow the paradigm of vertical inheritance of their…

种群与进化 · 定量生物学 2016-02-15 Claudia Solís-Lemus , Cécile Ané

Finding out the computational redundant part of a trained Deep Neural Network (DNN) is the key question that pruning algorithms target on. Many algorithms try to predict model performance of the pruned sub-nets by introducing various…

计算机视觉与模式识别 · 计算机科学 2020-08-06 Bailin Li , Bowen Wu , Jiang Su , Guangrun Wang , Liang Lin

This study compares the performance of state-of-the-art neural networks including variants of the YOLOv11 and RT-DETR models for detecting marsh deer in UAV imagery, in scenarios where specimens occupy a very small portion of the image and…

计算机视觉与模式识别 · 计算机科学 2025-06-03 Agustín Roca , Gastón Castro , Gabriel Torre , Leonardo J. Colombo , Ignacio Mas , Javier Pereira , Juan I. Giribet

Accurate identification of individual leopards across camera trap images is critical for population monitoring and ecological studies. This paper introduces a deep learning framework to distinguish between individual leopards based on their…

计算机视觉与模式识别 · 计算机科学 2024-11-05 David Colomer Matachana

Discovering evolutionary traits that are heritable across species on the tree of life (also referred to as a phylogenetic tree) is of great interest to biologists to understand how organisms diversify and evolve. However, the measurement of…

Tree canopy detection from aerial imagery is an important task for environmental monitoring, urban planning, and ecosystem analysis. Simulating real-life data annotation scarcity, the Solafune Tree Canopy Detection competition provides a…

计算机视觉与模式识别 · 计算机科学 2026-05-06 David Szczecina , Hudson Sun , Anthony Bertnyk , Niloofar Azad , Kyle Gao , Lincoln Linlin Xu

Mathematical morphology is a theory and technique to collect features like geometric and topological structures in digital images. Given a target image, determining suitable morphological operations and structuring elements is a cumbersome…

计算机视觉与模式识别 · 计算机科学 2019-09-05 Yucong Shen , Xin Zhong , Frank Y. Shih