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In contrast to classical techniques for exploratory analysis of high-dimensional data sets, such as principal component analysis (PCA), neighbor embedding (NE) techniques tend to better preserve the local structure/topology of…

机器学习 · 统计学 2022-09-07 Roman Josef Rainer , Michael Mayr , Johannes Himmelbauer , Ramin Nikzad-Langerodi

Uniform Manifold Approximation and Projection (UMAP) is one of the state-of-the-art methods for dimensionality reduction and data visualization. This is a tutorial and survey paper on UMAP and its variants. We start with UMAP algorithm…

人机交互 · 计算机科学 2021-09-07 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

Neighbor embeddings are a family of methods for visualizing complex high-dimensional datasets using $k$NN graphs. To find the low-dimensional embedding, these algorithms combine an attractive force between neighboring pairs of points with a…

机器学习 · 计算机科学 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

Neighbor Embedding (NE) aims to preserve pairwise similarities between data items and has been shown to yield an effective principle for data visualization. However, even the best existing NE methods such as Stochastic Neighbor Embedding…

机器学习 · 计算机科学 2021-09-15 Zhirong Yang , Yuwei Chen , Denis Sedov , Samuel Kaski , Jukka Corander

Dimensionality reduction methods such as t-SNE and UMAP are popular methods for visualizing data with a potential (latent) clustered structure. They are known to group data points at the same time as they embed them, resulting in…

机器学习 · 计算机科学 2025-09-04 Elizabeth Coda , Ery Arias-Castro , Gal Mishne

Nonlinear dimensionality reduction lacks interpretability due to the absence of source features in low-dimensional embedding space. We propose an interpretable method featMAP to preserve source features by tangent space embedding. The core…

计算机视觉与模式识别 · 计算机科学 2024-04-03 Yang Yang , Hongjian Sun , Jialei Gong , Di Yu

Embeddings mapping high-dimensional discrete input to lower-dimensional continuous vector spaces have been widely adopted in machine learning applications as a way to capture domain semantics. Interviewing 13 embedding users across…

人机交互 · 计算机科学 2022-03-07 Angie Boggust , Brandon Carter , Arvind Satyanarayan

Nonlinear dimensional reduction with the manifold assumption, often called manifold learning, has proven its usefulness in a wide range of high-dimensional data analysis. The significant impact of t-SNE and UMAP has catalyzed intense…

机器学习 · 计算机科学 2026-04-02 Jungeum Kim , Xiao Wang

Motivation: The visualization and analysis of high-dimensional data are essential in biomedical research. There is a need for secure, scalable, and reproducible tools to facilitate data exploration and interpretation. Results: We introduce…

定量方法 · 定量生物学 2025-04-15 Xijin Ge

Conventional representation learning algorithms for knowledge graphs (KG) map each entity to a unique embedding vector, ignoring the rich information contained in the neighborhood. We propose a method named StarGraph, which gives a novel…

计算与语言 · 计算机科学 2023-01-05 Hongzhu Li , Xiangrui Gao , Linhui Feng , Yafeng Deng , Yuhui Yin

UMAP (Uniform Manifold Approximation and Projection) is a novel manifold learning technique for dimension reduction. UMAP is constructed from a theoretical framework based in Riemannian geometry and algebraic topology. The result is a…

机器学习 · 统计学 2020-09-21 Leland McInnes , John Healy , James Melville

Dimensionality reduction methods are employed to decrease data dimensionality, either to enhance machine learning performance or to facilitate data visualization in two or three-dimensional spaces. These methods typically fall into two…

机器学习 · 计算机科学 2025-08-26 Berat Dogan

Visualization methods based on the nearest neighbor graph, such as t-SNE or UMAP, are widely used for visualizing high-dimensional data. Yet, these approaches only produce meaningful results if the nearest neighbors themselves are…

机器学习 · 计算机科学 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

Information visualization is essential in making sense out of large data sets. Often, high-dimensional data are visualized as a collection of points in 2-dimensional space through dimensionality reduction techniques. However, these…

计算几何 · 计算机科学 2009-07-16 Emden R. Gansner , Yifan Hu , Stephen G. Kobourov

Interactive exploration of large, multidimensional datasets plays a very important role in various scientific fields. It makes it possible not only to identify important structural features and forms, such as clusters of vertices and their…

机器学习 · 计算机科学 2023-03-10 Bartosz Minch

We present StarSpace, a general-purpose neural embedding model that can solve a wide variety of problems: labeling tasks such as text classification, ranking tasks such as information retrieval/web search, collaborative filtering-based or…

计算与语言 · 计算机科学 2017-11-22 Ledell Wu , Adam Fisch , Sumit Chopra , Keith Adams , Antoine Bordes , Jason Weston

UMAP (Uniform Manifold Approximation and Projection) is among the most widely used algorithms for non linear dimensionality reduction and data visualisation. Despite its popularity, and despite being presented through the lens of algebraic…

机器学习 · 计算机科学 2026-02-13 Yang Yang

In traditional graph retrieval tools, graph matching is commonly used to retrieve desired graphs from extensive graph datasets according to their structural similarities. However, in real applications, graph nodes have numerous attributes…

信息检索 · 计算机科学 2025-07-29 Yuhua Liu , Haoxuan Wang , Jiajia Kou , Ling Sun , Heyu Wang , Yongheng Wang , Yigang Wang , Jinchang Lic , Zhiguang Zhou

Dimension reduction and visualization of high-dimensional data have become very important research topics because of the rapid growth of large databases in data science. In this paper, we propose using a generalized sigmoid function to…

机器学习 · 统计学 2020-07-20 Yu Liang , Arin Chaudhuri , Haoyu Wang

Stochastic neighbor embedding (SNE) methods $t$-SNE, UMAP are two most popular dimensionality reduction methods for data visualization. Contrastive learning, especially self-supervised contrastive learning (SSCL), has showed great success…

机器学习 · 计算机科学 2023-09-18 Yi Zhang
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